Sequence
atgc intronic sequence ATGC exonic sequence...gtgatgctcattttgactataatcattttgctaacctgattttgaccatgataacaaaatttttataataataataatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G036034_T01 (Zea mays), 3'ss of exon 8
gtgatgctcattttgactataat-cattttgctaacctgattttgaccatgataacaaaatttttataataat-aataatcttaaatttgaattctt-tgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
| || ||| | || | || || || ||| | || || || || ||| | | | | | ||||| || | ||||| ||| || ||||| ||||||| || || || |||||||| ||||| ||| |||| ||||| |||||||| ||||||||||| || || || || |
---ttccttattgataatacgacacagatttcttgtagtattcttgtcagaatcgttgttattcaattatatttactgactgctcgtgtgaataattgtacagGTTGCATCAACTCATCCTTTGGCTGTCACAAATTGTAACATAGACATGGAGAGCTTAATCTCTGATCAGAACAGGAGCATTGCAACCCTTGCGATTACAA
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G04820.1 (Glycine max), 3'ss of exon 8
-gtgatgctcattttg--actataatcattttgctaacctgattttgaccatgataacaaaatttttataataataataatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
| | || | | | | | || | | | ||| || | | || | |||| | |||||| || | | | | |||||| ||||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| |||| ||||||||||||||||||||||| ||||| || || || |
cattttccttaatatagtattgtagctaatctcataagatg-tgtcgaacttgatccatacatttttttataatggttgagtgtggctttgaa--ctttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCCACACTTGCCATAACTA
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G01520.1 (Glycine max), 3'ss of exon 8
---gtgatgctcattttga-ctataatcattttgctaa--cctgattttgaccatgataacaaaatttttataataataataatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
|| | || | ||| ||| | | | || | | | | || |||| |||||| | | ||| | | || || ||| ||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| || || || || || |
aaatcaataccttcactggtccctaaatattctaatgagatttgccgtggtcaaccatgacaaggttttta----atcattaagtgtgacttgaaa--cttggcagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTTGCTATTACTA
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 8
gtgatgctcattttgactataatcattttgctaacctgattttgaccatgat--aacaaaatttttataataataataatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
|| | ||| || | | | | ||| || ||||| | |||| | |||| || | | ||||| ||| |||||||||||||| ||||||||||| || || ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| || || || || || |
-aaatcaagactttcgctgttccctaaatattctaatgagatttgccatggtcaaacatgtcacggtttttaatcattaagtgtgtcttgaaa-cttgacagGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTCGCTATTACTA
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G12610.2 (Glycine max), 3'ss of exon 8
-gtgatgctcattttg--actataatcattttgctaacctgattttgaccatgataacaaaatttttataataataat-aatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
| | || | | | | | || | | | ||| || | |||| | |||| || | |||| | ||||| | | | |||||| | ||||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| || | |||||||||||| |||||||||| ||||| || || || |
cattttccttaatatagtattgtagctaatgtcataagatg-tgttgaacttgatc-catacttttatttataatggttgagtgtggctttgaa--ccttgcagGTGGCAATGACACATCCGATGGCAGTCACTAACTGCAATATTGATATGGAAAGTTTACTCTCTGACCAGAACCGAAGCATTGCCACACTTGCCATTACTA
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------------gtgatgctc----attttgactataatcattttgctaacctgattttgaccatgataacaaaatttttataataataataatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
||||| | ||| || || | |||| | || | | || ||| |||| | | | ||| | || || ||| | || |||||| ||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| || |||| ||||| || || ||||||||||| ||||| ||||| ||||
gtttgcaatgctttcaactgttctctttgtacattgacaccgaaatgatgttttactattctgggtagattcatcat--tacctttatcatgaggatgaggagata--tttcactgta-tactaaacacaagtttgaacc----acagGTTGCAATGACTCATCCTATGGCTGTCACCAACTGCAACATTGATATGGAGAGTTTAATCTCTGATCAAAATAGAAGCATTGCTACACTCGCAATAACCA
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S41_154V6.1 (Physcomitrella patens), 3'ss of exon 8
gtgatgctcattttgactataatcattttgctaacctgattttgaccatgataacaaaatttttataataataataatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
|| || | ||| | | | | | | | || | || || || | ||| || | || | | | | ||||||| ||| ||| |||||| | || || || | ||||||||| || |||||||| || ||||||||||| ||| | |||||||| || || |||||||| |
gtattgttgcggatgaagactagtaaaggcattattttacttatattatacctgtcaatcgcttgcactaagcattttgtttcctcgggttgttatgcagGTTGCACAGACCCATCCATTAGCAGTCACCAGCTGCAACATCGACATGGAAAGTCTCATTTCTGACCAAAACCGCAGCATTGCTACTCTTGCAATCACTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359101|gb|EC920028.1|EC920028EST: GTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAG GTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAA
genomic: GTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAGgttatttctt ... ttctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatgataacaaaatttttataataataataatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
tgataac putative branch site (score: 2)
ttctttgc putative PPT
ataacaaaatttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatgctcattttgactataatcattttgctaacctgattttgaccatgataacaaaatttttataataataataatcttaaatttgaattctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-tgatgct
- - - - - - - - - - - - - - -gctaacc
- - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataataa