Sequence
atgc intronic sequence ATGC exonic sequencegtaagaaattgacatcaacaatttcttatagggctcaaactgtaatgtgtattttggtttcatcttatttcaattcctgtccatgttgccagGGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACGATAATGTACACCAGTGGAACAACTGGAGAACCAAAAGGAGTTGTTTTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01880.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G01060.1 (Glycine max), 3'ss of exon 8
---------------------------------------gtaagaaattgacatcaacaatt-tcttatagggctcaaactgtaatgtg--tattttggtttcatcttatttcaattcctgtccatgttgccagGGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACGATAATGTACACCAGTGGAACAACTGGAGAACCAAAAGGAGTTGTT-TTAT
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gtaagatgttaaacttggtttgcaattgcctatttggtgttccaaaattaggatcatgaaccattttatatgagt-attctgagatataattataacagtttaatattttttc--ttcctttct------ctagGGATGTCTGGATTGGGATCTACCATCAAAAAAGAAGACTGACATTTGCACAATAATGTACACAAGTGGAACAACTGGAGATCCCAAAGGTGTCGTTATTA-
upper sequence: Vv03s0063g01880.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G20860.1 (Glycine max), 3'ss of exon 8
--------------------------------------gtaagaaattgacatcaacaatttcttatagggctcaaactgtaatgt--gtattttggtttcatcttatttcaattcctgtccatgttgccagGGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACGATAATGTACACCAGTGGAACAACTGGAGAACCAAAAGGAGTTGTT-TTAT
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gtaagattttaaacctggttttcaaatgcctatttgatgttcaaaataaggatcatgaaccattttttatgagtactttgagatattagtaaaacagtttaatatcttctcttttctt--ccttcctat-agGGATGCCTGGATTGGGATCTACCATCAAAAAAGAAGAATGACATTTGCACAATAATGTACACAAGTGGAACAACTGGAGATCCCAAAGGTGTTGTTATTA-
upper sequence: Vv03s0063g01880.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G13050.1 (Glycine max), 3'ss of exon 8
-------------------gtaagaaattgacatcaacaatttcttatagggctcaaactgtaatgtgtattttg-gtttcatcttat----ttcaattcctgtccatgttgccagGGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACGATAATGTACACCAGTGGAACAACTGGAGAACCAAAAGGAGTTGTT-TTAT
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gtaggaaccctgattcttaatttcatattgatgtttataatcaacagcaagagccattttg-attgagtattgagagatagattttttaacattgaatatatcttcatttctccagGGAAATATCGATTTAGACCTTCCACCGAAAAAGAAGACTAACATCTGCACAATAATGTACACAAGTGGAACAACAGGCGAACCCAAAGGCGTCATTATTA-
upper sequence: Vv03s0063g01880.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G49430.1 (Arabidopsis thaliana), 3'ss of exon 8
--------------------------------gtaagaaattgacatcaacaatttcttatagggctcaaactgt---aatgtgtattttggtttc------atcttatttcaattcctgtccatgttgccagGGAAGTTTGGATTGTG---AACTTCCTCCAAAACAGAAGACAGACATCTGCACGATAATGTACACCAGTGGAACAACTGGAGAACCAAAAGGAGTTGTTTTAT
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gtcagtgtttagaactagacgaaaaatataacttctataatttacaaacattttgacttatagggttaactttatcaagatttgaatttctttctctcgtgggtcttaaataagtatttgaaaatcttatcagGGAAACTTAGATGAGGCAAATCTACCTCGTAAGCGAAAGACAGACATCTGCACAATAATGTACACAAGCGGGACGACTGGAGAACCCAAAGGTGTAATCT---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351041162|gb|FQ444139.1|FQ444139EST: CTGAAGAGCTGGGGGTATCTTGCTTTTCTTGGGAAGAATTTGCTCTATTG GGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACA
genomic: CTGAAGAGCTGGGGGTATCTTGCTTTTCTTGGGAAGAATTTGCTCTATTGgtaagaaatt ... atgttgccagGGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactgtaatgtgtattttggtttcatcttatttcaattcctgtccatgttgccagGGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACGATAATGTACACCAGTGGAACAACTGGAGAACCAAAAGGAGTTGTTTTAT
atcttatttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagaaattgacatcaacaatttcttatagggctcaaactgtaatgtgtattttggtttcatcttatttcaattcctgtccatgttgccagGGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACGATAATGTACACCAGTGGAACAACTGGAGAACCAAAAGGAGTTGTTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG