1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttattggtctgagtcctgaatctgttggtatgctcaaattgtagttgtgatttgtagaagtaggcttttaaactcttcagttctgattgtatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGAATCCAG
species | Vitis vinifera |
transcript | Vv03s0063g00290.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGAEST: gi|71884548|gb|DT033603.1|DT033603
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
EST: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGAEST: gi|71881529|gb|DT030584.1|DT030584
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
EST: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGAEST: gi|71886428|gb|DT035483.1|DT035483
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
EST: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAEST: gi|71888307|gb|DT037362.1|DT037362
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCA
EST: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
ttgtgatttgtagaagtaggcttttaaactcttcagttctgattgtatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGAATCCAG
ttctgat putative branch site (score: 3)
ttttaaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattggtctgagtcctgaatctgttggtatgctcaaattgtagttgtgatttgtagaagtaggcttttaaactcttcagttctgattgtatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - tcctgaa
- - - - - - - - - - -tctgttg
- - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg