Sequence
atgc intronic sequence ATGC exonic sequencegtggctatgagatacttattctatataactcttaatttggttttggatgaagagaatgtatttatgctgcagcttccttcatgactttccaagtctcctgttatattcgtagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os04g23890.4 (Oryza sativa), 3'ss of exon 8
gtggctatgagatacttattctatataactcttaatttggttttggatgaagagaatgtatttatgctgca---gcttccttcatgactttccaagtctcctgttatattcgtagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA
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gtatctgaaaaatctgtgccaaatgctactcccaagtattttggagcttgcaatttttaactagtagtgggtatgattactacatggtagt--gattgcacatctgtgagtgcagGGGGAGCTTCAATACTTCATTGGTGTGCAACTTGATGGAAGTGATCATGTTGAACCCCTCAGGAACCGCCTTTCGGAGAATACTGAGATACAGAGTGCCA
upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 7
gtggctatgagatacttattctatataactcttaatttggttttggatgaagagaatgtatttatgctgcagcttccttcatgactttccaagtctcctgttatattcgtagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA
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-----------gtactcactggctatatctcttgtcaacttgttgcac-------acttgttcatgtggtaccgtgcacactcatttt---attatttgggtat----gtagGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGACCATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTA
upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 10
gtggctatgagatacttattctatataactcttaatttggttttggatgaagagaatgtatttatgctgcagcttccttcatgactttccaagtctcc--tgttatattcg------------tagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA
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gtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaa-actatatattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA
upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 8
gtggctatgagatacttattctatataactcttaatttgg-ttttggatgaagagaatgtatt--------tatgctgcagcttccttcatgactttccaagtctcc-----tgttatattcgtagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA
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gtgaatgtgatactgttatggtagaaaacaattaatctgaatcatgaacattcaatatctattaaacaatacattgtgttcccccctttttagtttctaatgtttttctcaatgatttgtatttagGGTGAACTTCAATACTTCATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGCCTGTCTGAGACAACTGAGCAACAAAGTGCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatttatgctgcagcttccttcatgactttccaagtctcctgttatattcgtagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA
tgttatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggctatgagatacttattctatataactcttaatttggttttggatgaagagaatgtatttatgctgcagcttccttcatgactttccaagtctcctgttatattcgtagGGTGAACTTCAATACTTCATTGGTGTCCAATTAGATGGAAGTGATCATCTGGAACCCCTCCGAAACCGCCTGTCAGAGCAAACTGAGCAACAAAGTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA