Sequence
atgc intronic sequence ATGC exonic sequence...agtacactccttaatgaatatgttttaccagataaatcttttgaaacaatgtttttggttgtggctcctcatgaacatctgttttgctttctttatgcagATTGTGAATGATGTGAAATTCACTGTAAACCAAGCAGTGGAGCCTGTGGAGAAGGGAATCACAAAGTTCAATCAGAAATTACATAAAATCTCTCAGAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G00300.1 (Glycine max), 3'ss of exon 6
agtacactccttaatgaatatgttttaccagataaatcttttgaaacaatgtttttggttgtggctcctcatgaacatctgttttg--ctttcttt-----atgcagATTGTGAATGATGTGAAATTCACTGTAAACCAAGCAGTGGAGCCTGTGGAGAAGGGAATCACAAAGTTCAATCAGAAATTACATAAAATCTCTCAGAACA
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-------tccatagttatctttattagtagtatacaaatattggcttattactctcaaatgcctttttaatattttatctgcttcaccctttctttttaacattcagATTGTAAAAGATGTGAAGTTCACTGTCCATCAAGCAGTGGAGCCTGTGGAAAAGGGTATCACTAGATTCAACGAAAAACTACACAGAATCTCCGAAAATA
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G00250.1 (Glycine max), 3'ss of exon 6
agtacactccttaatgaatatgttttaccagataaatcttttgaaacaatgtttttggttgtggctcctcatgaacatctgttttgctttctt-tatgcagATTGTGAATGATGTGAAATTCACTGTAAACCAAGCAGTGGAGCCTGTGGAGAAGGGAATCACAAAGTTCAATCAGAAATTACATAAAATCTCTCAGAACA
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agcgaagagccactgggcaatggggtacgaagtttttttatacaaatattggctt-attactcatattttatctgcttcaccctttctttttaacattcagATTGTAAAAGATGTGAAGTTCACAGTCCATCAAGCAGTGGAGCCTGTGGAAAAGGGGATCACTAGATTCAACGAAAAACTACATAGAATCTCTGAAAATA
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G38360.2 (Arabidopsis thaliana), 3'ss of exon 7
agtacactccttaatgaatatgttttaccagataaatcttttgaaacaatgtttttggttgtggctcctcatgaacatctgttttgctttctttatgcagATTGTGAATGATGTGAAATTCACTGTAAACCAAGCAGTGGAGCCTGTGGAGAAGGGAATCACAAAGTTCAATCAGAAATTACATAAAATCTCTCAGAACA
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-----------------gtgagtctt-ctaattctttcatacaaataaatgatcattggattaagagcttctgatca-caaagaggctaaatgt-tgtagATTGTTAAAGACGTGAGATTCACAGTGACTCAAGCGGTGGAGCCTATGGAGAAGAGCATCACAAAGTTCAATGAGAAACTGCACAAGATCTCCCAGAACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716138|gb|FC068057.1|FC068057EST: TGACTATCGGAGAAAGTGTTCGGGATGTTTTCATTGGTGGTGGTGGATAT ATTGTGAATGATGT
genomic: TGACTATCGGAGAAAGTGTTCGGGATGTTTTCATTGGTGGTGGTGGATATgtaagctttc ... ctttatgcagATTGTGAATGATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaatgtttttggttgtggctcctcatgaacatctgttttgctttctttatgcagATTGTGAATGATGTGAAATTCACTGTAAACCAAGCAGTGGAGCCTGTGGAGAAGGGAATCACAAAGTTCAATCAGAAATTACATAAAATCTCTCAGAACA
tctgttttgctttctt CT-rich tract
tttctttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtacactccttaatgaatatgttttaccagataaatcttttgaaacaatgtttttggttgtggctcctcatgaacatctgttttgctttctttatgcagATTGTGAATGATGTGAAATTCACTGTAAACCAAGCAGTGGAGCCTGTGGAGAAGGGAATCACAAAGTTCAATCAGAAATTACATAAAATCTCTCAGAACA
- - cactcct
- - - - - - aatgaata
- - - - - - - - - - - - - - -agataaa
- - - - - - - - - - - - - - - - - - - - - -aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctca