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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaattttaaaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------------gtatttatattaaat----taatatagtggtatttattattgtttgtggt-gtaaattctaaattttaaaccaggcttca--gaatagtt---ggctttgaatagtttctgatat---gct--caagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
                                               | ||  | | ||| |    || | ||   ||  ||||| || | | ||||  || || |   ||||| |||     || |    || |||   ||      ||| ||||| | |    |||     ||  |||||| || || |||||||||||||| |||||||| ||||||||||| || || ||||| |||||||| |||||||||||||| || || || ||||||||  
gtacatatagcagacttttgaagttctgattcataccaatttgttatgcatggaaactaattctgctagtgtatatgtgcttatt-ttctgtatggttatatatgcatcatttttaacagaagttgacctgattgttaaaggtagaacatattttctaacaccaggctactctgtttacagGCAAATGATCCCACCATTGAACGTATCATCACCCCTCGAATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCT

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 8
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaatttta---aaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
                         | |   || ||  |  |      |  |||||||||| |   ||  ||  |  |  | ||     ||| || |  |    ||   |||   |  |||||| |||||||||||||||||||| || ||||| ||||| |||||||| || || || |||||||| |||||||||||||| || ||||| ||||| ||  
--------------------cccctgcacacataatcatgagccaatcattttctaaatttgacataattagtgtataatacagcatatttttaacacctc--aattctctctgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCT

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 8
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaatttta---aaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
               ||   |   |   |  || |   |  |     || |||||| || | |   || |||  |  || | ||     ||| || |  ||  |||   || |      ||||| || || |||||||||||||| || ||||| ||||| |||||||| || || || |||||||| |||||||||||||| || ||||| ||||||||  
--------------ctatcctctggccctgcataacgatgagccaaatatattctacatgtgacataatcagtgtatagcacagcatatttttaacacctt--gatcctctta------cagGCTAATGATCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCT

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 8
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaattttaaaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtgg------acagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
                       ||    |||| ||||| |    |  ||||| | | ||    ||| |  |    |  |  ||    | || | | |||  | || |   |||       | |||| || || || || ||||| || |||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||||
-----------------------tgtggattatcattgtgttattttcaaattttgatttcatgacctg--tatgaaggaactgatcattaaaattctctcttttgttgctgtgattcattatagGCAAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATAC

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 8
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaattttaaaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC-
          |  || |  || ||| |||||   | | ||  |    | |  | ||       | |    | | | |||   || || |   |    | |||| |  |       |||||| || || || || ||||| || |||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| |||| 
---------gtggatgatcattgtgctatttgcaaattttgatttcatgacctgtatgaag-gagctgatcattaaaatc-ctgtctcttgttg--ctgtgatttatt-------acaggCAAATGATCCTACGATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACT

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G42940.1 (Glycine max), 3'ss of exon 8
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaattttaaaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
      |    ||||| | ||   | | |||  | |  |   | |  | || |          | | |  |   | |||  |    |   |||   |    || || |  | ||  ||||| || || || || |||||||| || ||||||||||| |||||||| || |||||||||||||| || |||||||||||||| ||||||||||| ||||
-----aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaagt----------agctaatccctaaaatgttctcttgctaatg--tgaatatgtgatttactg--cagGCAAATGATCCTACAATTGAACGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATAC

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 9
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaattttaaaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
      |    ||||| | ||   | | |||  | |  |   | |  | ||            | | |  |   | |||  |    |   |||   |    || || |  | ||  ||||| || || || || ||||| || || ||||||||||| |||||||| || |||||||||||||| || |||||||||||||| || |||||||| ||||
-----aaagcaaaatttaaatgaggctttttgatttcctgacttgcatgaag----------gagctaatccctaaaatgttctcttgctaatg--tgaatatgtgatttactg--cagGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATAC

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 9
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaa-attttaaaccaggcttcagaatagttggctttg-aatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
                                  |    | |   |   | | |  | || || || ||   || ||      ||  |||   |  |||||| ||    |     | |||||| ||||||||||| ||||| || |||||||||||||| || || || || |||||||| || || ||||||||||||||||| ||||| |||||||| |
--------------------------------gcaagtctcgcaatcacactacagacatcttgaagcaaattttagttccaatgtttttctgaaggtttctcattctgttttccgcacagGCAAACGACCCCACTATTGAGCGTATCATCACTCCTCGTATCGCACTTACAACTGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCATTC

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EDP06821 (Chlamydomonas reinhardtii), 3'ss of exon 6
---------------------gtatttat-attaaattaatatagtggtat--ttattattgtttgt--ggtgtaaattctaaattttaaacca------ggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
                           ||  | |         ||   |||  |  |||| || ||   |     |   |    |||  |||||      | ||||         ||||      ||     | |    |        | |||||| |||||||||||||| ||||||||||| || || || || || |                                                   
acatgcaccagccgcccgactaagccaattgtcagggccccgcagccatatcgtgcttatcgtgtgccggaccccacgccgctgtttctaaccaccgtagGACTTCGAGGAGAACGGCTCGCTGGAGCGCACGGTGCTGTTCCTGAACCTGGCCAATGACCCCACCATTGAGCGCATCATCACGCCGCGTATCGCGCTGA---------------------------------------------------

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatttatattaaattaatatagtggtatttattattgtttgtggtgtaaattctaaattttaaaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
           |||| ||| |  |   |||   | ||  || |      ||    || || |     | |  |    ||| || |  || |  ||||         ||   |    ||||| || || || || |||||||| || |||||||||||||| || || || ||||||||||| |  || ||||||||||| || ||||| || ||||| |
-----------aaatcaatgttcttccattccctctttctttttcctcgaa---caatttctgtggtaagtctt---atatttagaattta--agttcgaatctctcttgggcttgcagGCTAATGATCCAACGATTGAACGGATTATCACTCCTCGAATCGCCCTTACTACTGCTGAATACTACGCTTATGAATGTGGGAAGCATGTCCTGGTCATCC

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 8
gtatttatattaaattaatatagtggtatttattattgtttgtggtgt-aaattctaaattttaaaccaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
                 || |         | |  | |||   ||| | |||||    |  | |   | ||     ||| | || |  ||   || |||   || |   |   |   ||||| || || || || ||||| || |||||||||||||||||||| ||||| |||||||||||||  || ||||| ||||| || |||||  | |||||||
----------------catgtttccaaccctctcttcgttctcggtatcaaatttcgtaaatcagtgctggaac--gaacatttcgtgtt--ttaattttgaatttatactgatttgcagGCTAATGATCCAACAATTGAGCGTATCATCACTCCTCGAATTGCACTCACTACTGCTGAATATTATGCTTATGAGTGTGGGAAGCATGTGTTGGTCATAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720101|gb|EE095728.1|EE095728
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|110719306|gb|EE097131.1|EE097131
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|30129885|gb|CB915224.1|CB915224
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|30325484|gb|CD008746.1|CD008746
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCAAC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|110712807|gb|EE088186.1|EE088186
EST:     GGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: GGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|33402634|gb|CF208261.1|CF208261
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|110723346|gb|EE100552.1|EE100552
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|156737783|gb|EV241904.1|EV241904
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|30323990|gb|CD007252.1|CD007252
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCA
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCA
EST: gi|32248996|gb|CD714815.1|CD714815
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|71862037|gb|DT011092.1|DT011092
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|34542425|gb|CF510657.1|CF510657
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|27755418|gb|CB036173.1|CB036173
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|32249022|gb|CD714841.1|CD714841
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|46917753|gb|CN547082.1|CN547082
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|110424996|gb|EC991371.1|EC991371
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|56409525|gb|CX017777.1|CX017777
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACC
EST: gi|56409500|gb|CX017752.1|CX017752
EST:     ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTG                         GCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTC
genomic: ATTTCGAGGAAAATGGATCAATGGAGAGAGTGACTCTATTCCTTAACCTGgtatttatat ... aagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaggcttcagaatagttggctttgaatagtttctgatatgctcaagtggacagGCCAACGACCCCACCATTGAACGCATCATCACTCCTCGAATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATAC
                                ttctgat  putative branch site (score: 3)
                      tttgaata  TA-rich tract