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...ttgatgagtgccatctatgttcatcatgttgatatcattaatccttataggatgatcctgtggaagtttgtctcatctgatattgtgctacttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCAGAGGAGTAGTAAAAATGAGGCGTG
species | Vitis vinifera |
transcript | Vv03s0038g00450.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|34546606|gb|CF514838.1|CF514838
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|33402993|gb|CF208620.1|CF208620
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCGGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|351015968|gb|FQ431923.1|FQ431923
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTCCEST: gi|33405379|gb|CF211006.1|CF211006
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|110395541|gb|EC961207.1|EC961207
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|110381131|gb|EC946449.1|EC946449
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|110716961|gb|EE092399.1|EE092399
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|110699270|gb|EE076122.1|EE076122
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|349815130|gb|FQ410353.1|FQ410353
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTCCEST: gi|110688718|gb|EE067590.1|EE067590
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|33403079|gb|CF208706.1|CF208706
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCGGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|110729518|gb|EE105539.1|EE105539
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCEST: gi|110369584|gb|EC933748.1|EC933748
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTC
EST: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAG ATCATGGCAATCGGGACACTAGCTTTATGC
genomic: TGTCTGCTTTGCAGAGTCCAGCAATATTTCGATTTTGTGCTATCCCACAGgtttaaatct ... cttttactagATCATGGCAATCGGGACACTAGCTTTATGC
tataggatgatcctgtggaagtttgtctcatctgatattgtgctacttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCAGAGGAGTAGTAAAAATGAGGCGTG
atctgat putative branch site (score: 4)
ctactttt putative PPT
tactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatgagtgccatctatgttcatcatgttgatatcattaatccttataggatgatcctgtggaagtttgtctcatctgatattgtgctacttttactagATCATGGCAATCGGGACACTAGCTTTATGCTACAACAATATTGAGGTCTTCAGAGGAGTAGTAAAAATGAGGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - -gccatct
- - - - - - - - - - -catcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gatcctg