Sequence
atgc intronic sequence ATGC exonic sequence...cacatccttaacttatatcaacctttgaatgtcactatgtgttcattgtttgtattaattgttgttttgaacttagaagaagctactttatttctgacagGCAGACCAAAACCGAATCGATAGGCATCAGTTGCCATTATATGGTGTGGAGGGAAGGTTTGAAAGGATAAACCAGCATCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G38410.1 (Glycine max), 3'ss of exon 5
----------------------------------------------------------------------cacatccttaacttatatcaacctttgaatgtcactatgtgttcattgtttgtattaattgttgttttgaacttagaagaagctactttatttctgacagGCAGACCAAAACCGAATCGATAGGCATCAGTTGCCATTATATGGTGTGGAGGGAAGGTTTGAAAGGATAAACCAGCATCCA
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gttggtacttcaacaataattttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattttctattcacttctatttttgcaaaatgg-atttggagaaaaacttcattgatagtcattgaaaatttgaaagaaactttcttgtccgtaacagGCTGACCTGAATCGAATAAGTAGGAATCAAGTGCCACTCTATGGTTTGGAAGGAAGGTTTGAAAGAATAAACCAACATCCA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G02850.1 (Glycine max), 3'ss of exon 9
-----------------------------------------------------------------------cacatccttaacttatatcaacctttgaatgtcactatgtgttcattgtttgtattaattgttgttttgaacttagaagaagctactttatttctgacagGCAGACCAAAACCGAATCGATAGGCATCAGTTGCCATTATATGGTGTGGAGGGAAGGTTTGAAAGGATAAACCAGCATCCA
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gttggtacttcaacaataacttttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattctcttttcacttctatttttgcaaaatgg-atttggagaaaaacttcattgatagtcattgaaaatttgaaagaaactttcttgtccgtaacagGCTGACCTGAATCGAATAAGTAGGAATCAAGTGCCACTCTATGGTTTGGAAGGAAGGTTTGAAAGAATAAACCAACATCCA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G42590.1 (Glycine max), 3'ss of exon 3
--cacatcc--ttaacttatatcaacctttgaatgtcactatgtgttcattgtttgtattaattgttgttttgaacttagaagaagctactttatttctgacagGCAGACCAAAACCGAATCGATAGGCATCAGTTGCCATTATATGGTGTGGAGGGAAGGTTTGAAAGGATAAACCAGCATCCA
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tttaaatcatattgttttatccaatattttaattgaaactttatatgtagttttcttata----gttgttgaaaatttgaaagaaactttcttgtccgtatcagGCTGGCCTGAATCAAATAAGTAGGAATCAAGTGTCACTTTATGGTTTGGAAGGAAGGTTTGAAAGAATAAACCAACATCCA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G09710.1 (Glycine max), 3'ss of exon 9
-----------------------------------------------------------------------cacatccttaacttatatcaacctttgaatgtcactatgtgttcattgtttgtattaattgttgttttgaacttagaagaagctactttatttctgacagGCAGACCAAAACCGAATCGATAGGCATCAGTTGCCATTATATGGTGTGGAGGGAAGGTTTGAAAGGATAAACCAGCATCCA
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gttggtacttcaacaataatttttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattttcttttcacttctatttttgcaaaatgg-atttggagaaaaacttcattgatagttgttgaaaatttgaaagaaactttcttgtccttaacagGCTGACCTGAATCGAATAAGTAGGAATCAAGTGCCGCTCTATGGTTTGGAAGGAAGGTTTGAAAGAATAAACCAACATCCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtttgtattaattgttgttttgaacttagaagaagctactttatttctgacagGCAGACCAAAACCGAATCGATAGGCATCAGTTGCCATTATATGGTGTGGAGGGAAGGTTTGAAAGGATAAACCAGCATCCA
tattaat putative branch site (score: 2)
ctttatttct putative PPT
tattaattgttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacatccttaacttatatcaacctttgaatgtcactatgtgttcattgtttgtattaattgttgttttgaacttagaagaagctactttatttctgacagGCAGACCAAAACCGAATCGATAGGCATCAGTTGCCATTATATGGTGTGGAGGGAAGGTTTGAAAGGATAAACCAGCATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
cacatcc
- - - - - - - - atcaacc
- - - - - - - - - - - - - gaatgtc
- - - - - - - - - - - - - - - - - - -tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagaa