Sequence
atgc intronic sequence ATGC exonic sequencegtaaacattaaaatgccttctcattggtttccttatgtattctaaatagagtgataatttggtttcaggcctttgctgacaattgtaaatcttttgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os04g46940.1 (Oryza sativa), 3'ss of exon 2
gtaaacattaaaatgccttctcattggtttccttatgtattctaaatagagtgataatttggtttcaggcctttgctgacaattgtaaatcttttgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
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-----------------gtaagttcagtttcatcgtggtaattcaacggat--atcatttcttatcaattctaaatagtc--ttcttcatccttt-cagGTCATCATTCTTTCTTTGCTTACTTGGCTTGCTTGGTTCTTAGCTGGGAGGCTTCATGGTTACCCTAACTCATGGATACCATCTTCCATGGATAGCTTTC
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G143512_T01 (Zea mays), 3'ss of exon 2
gtaaacattaaaatgccttctcattggtttccttatgtattctaaatagagtgataatttggtttcaggcctttgctga-caattgtaaatct-tttgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
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----------------------gtatgctcagttacgtttttgtaataaaatcaatgggggtaaacttatcaatgctgaataatcttccccatgtttgcagGTTATCGTTCTCTCTTTGCTTACTTGGCTTGTGTGGTTCTTAGCTGGGAGATTCCATGGTTACCCATACTCATGGATACCATCTTCCATGGATAGCTTTC
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G42800.1 (Glycine max), 3'ss of exon 2
gtaaacat----taaaatgccttctcattggtttccttat---gta---ttctaaatagagtgata---atttggtttcaggcctttgctgacaattgtaaatcttttgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
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gtaagcctagtactaactacttttttctgagtttgctcattagatatgtttattgatggagtcagaggaactacatctatgctcatcggtgccatttttattttttttgcagGTCATTGCGCTTTCTCTTTCAACATGGCTTTCCTGGTTTCTGGCTGGAAAGTTCCATGCATACCCAAAATCTTGGATACCATCTTCCACAAACAGCTTTG
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G01680.1 (Glycine max), 3'ss of exon 4
-----------------gtaaacattaaaatgccttctcattggtttccttatgtattctaaata--------gagtgataatttggtttcaggcctttgctgacaattgtaaa------tcttt-tgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
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gtagttaattatataacatacgctttttaaaattttttttttatttgattcatgtcttcaagacattttttttaattgaatccttatgtttatatatatagtacttactttgaagggttttctttgtgcagGTTATTTTAATCTCATTTTCAACTTGGCTTGCATGGTTTTTAGCTGGAAGATTTCATGCTTACCCCAAGTCTTGGATACCATCTTCCATGGATAGCTTTC
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G32190.1 (Glycine max), 3'ss of exon 3
-------------------------gtaaacattaaaatgccttctcattggtttccttatg----tattctaaatagag---tgataatttggtttcaggcctttgctgacaattgtaaatcttt-tgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
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gtagttaattatataacatacgctttttaaaattatttttttatttgattcatgtcttcaagacattttttttaattgaatccttatgtttatatatatagtacttacttttgaagggttttctttgtgcagGTTATTTTAATCTCATTTTCAACTTGGCTTGCATGGTTTTTAGCTGGAAGATTTCATGCTTACCCCAAGTCTTGGATACCATCTTCCATGGATAGCTTTC
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G63440.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaacattaaaatgccttctcattggtttccttatgtattctaaatagagtgataatttggtttcaggcctttgctgacaattgtaaatcttttgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
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---gtgagtaatctgaccagttgataaacaaattatttagtcttt-tagaggcacaactattttttaaac--tcactgg--attataa---tgttgaagGTAATTTTCCTCTCGTTCTCAACTTGGCTTGCCTGGTTCTTAGCTGGGAAACTGCATTGGTACCCTGAATCCTGGATACCTTCTTCGATGGATAGCTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatagagtgataatttggtttcaggcctttgctgacaattgtaaatcttttgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
tgctgac putative branch site (score: 2)
tcttttgc putative PPT
aattgtaaatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacattaaaatgccttctcattggtttccttatgtattctaaatagagtgataatttggtttcaggcctttgctgacaattgtaaatcttttgcagGTCATTGTCCTTTCATTGTCAACTTTTCTTGCCTGGTTTTTAGCTGGAAAGTTCCATGGATACCCAAAATCTTGGATACCATCTTCCATGGATAGCTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA