Sequence
atgc intronic sequence ATGC exonic sequence...aaatgtgattgataacctggtttgaattaaatctaattccattgtaaacatcaataatgagctgtgtgttcttgactagcttactcaaatatttttgcagATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G42960.1 (Glycine max), 3'ss of exon 6
---------------------------------------------------------------------------aaatgtgattgataacctggtttgaattaaatctaattccattgtaaacatcaataatgagctgtgtgttcttgac-tagcttactcaaatatttttgcagATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAG
| | | ||||| ||| |||| |||||| || | | || | || | | | || | || | || | ||| | ||| | |||||||| | ||| ||||| ||||| ||||| || || || || |||||||||||||||||||||
gtaagagcttttaaaatatatttttatgtatatggcatgtaacatttatcttcgtgttgataaaagaagcggctctagggcattggataatctgacttgagttaaatata----tagtctacgcctcgacatggggccat-tgcttacaacattacttgttgaaac-taattgcagATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAG
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G02520.1 (Glycine max), 3'ss of exon 9
-----------------------------------------------------------------------aaatgtgattgataacctggtttgaattaaatctaattccattgtaaacatcaataatgagctgtgtgttcttgactagcttactcaaatatttttgcagATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAG
| | | ||||| ||| |||| |||||| || | | |||| | || | || | | |||| |||| | ||| || |||||||| | ||| ||||| ||||| ||||| || || || || |||||||||||||||||||||
gtaagagcttttaaaatatatttttatgtatatggcatgtaacatttatcttcgtgttgataaagtgcctctagggcattggataatctgacttgagttaaatatagtctgcgcctcgacatga-----gaccattgcttacaacacta-cttattgaaa-ataattgcagATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAG
upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 3'ss of exon 6
----------------------------------------------aaatgtgattgataacctggtttgaattaaatctaatt--ccattgtaaacatcaataatgagctgtgtgttcttgactagcttactcaaatatttttgcagATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAG
||| | | | || | || | | ||| | || ||| | | || | | | | | | | ||| | | ||||||||||| |||||| |||| ||||| || ||||||||||| || |||||||||||||||
gtatgtatatgttctctgcattctctgttttgtttttgtcctgtttgaatttt-tcctttacgcagaaacaactgatctgaataaactatgctaagcctagttagaaactttcctaagtctaatacaaattcataaacaaaat-gcagATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacatcaataatgagctgtgtgttcttgactagcttactcaaatatttttgcagATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAG
agcttac putative branch site (score: 3)
tattttt putative PPT
ttactcaaatattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatgtgattgataacctggtttgaattaaatctaattccattgtaaacatcaataatgagctgtgtgttcttgactagcttactcaaatatttttgcagATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAG
- - - - - - - -cctggtt
- - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - ttccatt
- - - - - - - - - - - - - - - - - - - - - -gtaaaca