1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aattagaacataagtgggaagatttggtttgaaaatcttggttgtaaccatacatgaaaatgagtcttatgtcacttcaatttgtgtgatgtccctgcagGGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAGCAAGAACCCCTATGGCTACGAATCGTCCCCAACACAAGACTAAAGGCTG
species | Vitis vinifera |
transcript | Vv02s0025g01580.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGAA GGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAGEST: gi|110720449|gb|EE096391.1|EE096391
genomic: GAGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGAAgtaagtgcta ... gtccctgcagGGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAG
EST: AGAATGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGNAA GGCCAN-TATGGCATCAEST: gi|110358293|gb|EC922402.1|EC922402
genomic: AGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGG-AAgtaagtgcta ... gtccctgcagGGCCAAGTATGGCATCA
EST: GAGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGAA GGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAGEST: gi|30329922|gb|CD013184.1|CD013184
genomic: GAGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGAAgtaagtgcta ... gtccctgcagGGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAG
EST: GAGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGAA GGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAGEST: gi|110385299|gb|EC949809.1|EC949809
genomic: GAGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGAAgtaagtgcta ... gtccctgcagGGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAG
EST: GAGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGAA GGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAG
genomic: GAGATTGTTTATGCATCGACAGCCAAAGCAGAAAAAGAGTTAAACTGGAAgtaagtgcta ... gtccctgcagGGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAG
aaccatacatgaaaatgagtcttatgtcacttcaatttgtgtgatgtccctgcagGGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAGCAAGAACCCCTATGGCTACGAATCGTCCCCAACACAAGACTAAAGGCTG
ttgtaac putative branch site (score: 2)
tgtccct putative PPT
atgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattagaacataagtgggaagatttggtttgaaaatcttggttgtaaccatacatgaaaatgagtcttatgtcacttcaatttgtgtgatgtccctgcagGGCCAAGTATGGCATCAGCGAGATGTGTCGGGACCAATGGAATTGGGCCAGCAAGAACCCCTATGGCTACGAATCGTCCCCAACACAAGACTAAAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - aacataa
- - - - - - - - - - - - - - - gaaaatc
- - - - - - - - - - - - - - - - - - - tggttgt
- - - - - - - - - - - - - - - - - - - - - - - -ccataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtga