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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccaaagatagtatattctgccttctgtatcttgagcatgttggctaacctttcagttctctgatctatatgtgcccgtttctctgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCACCCGAAGCGTTATAGCGCTCCACAACTTGATCAATAACAAG

Basic information

species Vitis vinifera
transcript Vv02s0025g01490.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 8
gtaggccaaagatagtatattctgccttctgtatct----tgagcatgttggctaacctttcagttctctgatctatatgtgcccgt----ttctctgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCACCCGAAGCGTTATAGCGCTCCACAACTTGATCAATAACAAG
|||    | | ||  | |   |    | || ||  |    ||| | ||| | ||    ||    |  |   ||   |   |||   |    ||  ||||||| |||||||| |||||||||||||| || ||  | || ||||| | ||| || || || || ||||| ||||||||||||||||||
gtaa-taacacatgttctcaccaatttactataattgagctgaacctgtcgtctgggtttcttatcttaaaatggttcgatgctaatgttctttcctgcagTTAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATAACAAG

upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G368908_T03 (Zea mays), 3'ss of exon 5
gtaggccaaagatagtatattctgccttctgtatcttgagcatgttggctaacctttcagttctct---gatctatatgtgcccgtttctctg--cagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCACCCGAAGCGTTATAGCGCTCCACAACTTGATCAATAACAAG
           ||  |  ||  |   ||||| || |     |  |   || | ||||   |  |||   || |  |||||   | ||  | ||  ||||||||||||| || ||||||||||| || ||||| || ||||| | ||| || || || ||||| ||||| |||||||| || |||
--------gtaatcttgcatctttttttctg-atttaacataattgacctgatcttttcatattctcgggagccttatgttgtctttcttttgtacagTGAAAACAAACGACATGATGTTGGTAATATATCTGTCTTCTCTGATCCGGAGTGTCATTGCGCTTCACAATTTGATCAACAATAAG

upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G05780.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaggccaaagatagtatattctgccttctgtatcttgagcatgttggctaacct---ttcagttctctgatctata-tgtgcccgtttctctgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCACCCGAAGCGTTATAGCGCTCCACAACTTGATCAATAACAAG
          |  ||| | | ||  | | |  || ||      |   |||  | |   |    |||  | |||| || |||     |   | |||||||||||||||||| |||||| | ||||| ||||| ||||| ||||  || || || || |||||||||||||||||||| ||||||
----------gtgagtttctgctatcattttgatattatattgggctgctttcttagatctgcttcattaatctttactgtatttataa-tgtgcagTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCATTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatgttggctaacctttcagttctctgatctatatgtgcccgtttctctgcagTGAAAACAAATGATATGATGTTGGTTATTTATCTTTCATCTCTCACCCGAAGCGTTATAGCGCTCCACAACTTGATCAATAACAAG
                                        cccgtttctct  CT-rich tract
                             atctatat  TA-rich tract