Sequence
atgc intronic sequence ATGC exonic sequence...agttttctgcatttttccctctttattgttagatacctatttataaacatgctattttgcctatagaaaagttaaagcttgtgtttttgtttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g48910.1 (Oryza sativa), 3'ss of exon 8
-agttttctgcatttttccctctttattgttagatacctatttataaacatgctattttgcctatagaaaagttaaagcttgtgtttttgtttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA
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cctgtttctgtttcaactctacaaaataattttatggacatc-agagcaatgtgactttatattcatctggtattaagataattatctgttttacctgcagGGAGGTGAAGAAAAGTATGAACTTCCTACAAAGCAAAAGGATGATATCTGTACAATAATGTACACCAGTGGAACAACTGGTGACCCTAAGGGAGTTTTAA
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g46750.4 (Oryza sativa), 3'ss of exon 5
agttttctgcatttttccctctttattgttagatacctatttataaacatgctatt----ttgcctat-agaaaagttaaagcttgtgtttttgtttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA---
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--ctttctaa---tttggaaagttgtttcaagagttcattttacacctattttattaggatagcttttcagatattctatttttcacatgacattgtatcttcagGCAGACCA---AGAATTCGATCTTCCAGTGAAAGCAAAGACTGACATATGTACTATAATGTATACCAGTGGAACTACTGGTGACCCCAAAGGTGTACTGATCT
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G152127_T01 (Zea mays), 3'ss of exon 8
--------------------------------------------------------------------------------agttttctgcatttttc-cctctttattgttagatacctatttataa-acatgctattttgcctatagaaaagttaaagcttgtgtttttgtt-tgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA
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gtaaggttctcctttcctgaccaaatcacacatggaatgaataagtgcttagttacaagaatattaataatgtgttaaggcatgtttttcatttcaaatttatacatttttgggggcatccttgcgagaaatatgccttgatatatcagttagaaaattattttttttctgttctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGTACAATAATGTACACCAGTGGAACAACTGGTGATCCTAAGGGAGTACTAA
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G02030.1 (Glycine max), 3'ss of exon 8
--agttttctgcatttttccctctttattgttagatacctatttataaacatgctattttgcctatagaaaagttaaagcttgtgtttttgtttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA
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gaggttaatttcagtcatgacctctaggaattaattatgtcttt-tgctttgaatattttgtgtttcccattcctaattcaatttttaatatctgc-cacagGGTCAAACTCAGAGCTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACCGGTGACCCCAAGGGAGTGTTGA
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G43470.5 (Glycine max), 3'ss of exon 8
agttttctgcatttttccctctttattgttag--atacctatttataaacatgctattttgcctatagaaaagttaaagcttgtgtttttgtttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA
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-gttaatttcagtcatgacctcttggaagtaattatgtcttttgcttctttggatattttgtggttcccattcctaattcattttttaatatctgc-cacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGA
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G36910.1 (Glycine max), 3'ss of exon 8
-agttttctgcatttttccctctttattgttagatacctatttataaacatgctattttgcctatagaaaagttaaagcttgtgtttttgtttgctc--acagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA
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taactctcagc--tcagaaaaggccaaggaaagcaatgtgtttatggatat-taactggtttcatttctcattcctcattccagtttttgatgtctagagcagGGTCATAATCAGAGTTTTGATCTTCCTGTTAAAAAAAAAAGTGATGTGTGTACAATAATGTATACAAGTGGAACTACTGGTGATCCCAAGGGAGTTTTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351028751|gb|FQ433181.1|FQ433181EST: TTGAAAAGTTTGGTTTGGCCATATATTCTTGGGAGGAATTCTTGCAACTG GGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGT
genomic: TTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatg ... ttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacatgctattttgcctatagaaaagttaaagcttgtgtttttgtttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA
tttttgttt CT-rich tract
tatagaaaagttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttttctgcatttttccctctttattgttagatacctatttataaacatgctattttgcctatagaaaagttaaagcttgtgtttttgtttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGTACAATAATGTACACAAGTGGAACAACCGGTGACCCCAAAGGTGTGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - ctgcatt
- - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgtg