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...atgttgtgcttattggactaactacgtagtattcacttctattgcttgtttcttacttgctaggtttgcaaaatgtgttgatttccttgattttgtgcagGACTCACAACTGAAGTCTGGATGTAGGCAAGATTCTTTGGAAG
species | Vitis vinifera |
transcript | Vv02s0012g02250.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAGTGCTAGTGAAGGTTCAAGCGAAGGGAGTGATGCAAATTCTCAGAGT GACTCACAACTGAAGTCTGGATGTAGGCAAGATTCTTTGGAAGEST: gi|110699224|gb|EE076034.1|EE076034
genomic: AGAGTGCTAGTGAAGGTTCAAGCGAAGGGAGTGATGCAAATTCTCAGAGTgtaagtatca ... ttttgtgcagGACTCACAACTGAAGTCTGGATGTAGGCAAGATTCTTTGGAAG
EST: AGAGTGCTAGTGAAGGTTCAAGCGAAGGGAGTGATGCAAATTCTCAGAGT GACTCACAACTGAAGTCTGGATGTAGGCAAGATTCTTTGGAAG
genomic: AGAGTGCTAGTGAAGGTTCAAGCGAAGGGAGTGATGCAAATTCTCAGAGTgtaagtatca ... ttttgtgcagGACTCACAACTGAAGTCTGGATGTAGGCAAGATTCTTTGGAAG
ttgtttcttacttgctaggtttgcaaaatgtgttgatttccttgattttgtgcagGACTCACAACTGAAGTCTGGATGTAGGCAAGATTCTTTGGAAG
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttgtgcttattggactaactacgtagtattcacttctattgcttgtttcttacttgctaggtttgcaaaatgtgttgatttccttgattttgtgcagGACTCACAACTGAAGTCTGGATGTAGGCAAGATTCTTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-tgttgtg
- - - - - - - - - - - - - - -tattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccttg