Sequence
atgc intronic sequence ATGC exonic sequence...tggagccagccatgagaactaacaacattcttttatttctggtgaaacaaagaacactgatggattgtggttttacatctatgtcatatcctgtttgcagGTCTTGCATCCACAAGCCATGAGACCCGCTAGAGAGAGTGATATTCCAGTTAGGGTCAAGAATTCTTATAATCCTGAAGCTCCTGGTACCCTCATCAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G05380.1 (Glycine max), 3'ss of exon 7
tggagccagccatgagaactaacaacattcttttatttctggt-gaaacaaagaac--actgatggattgtggttttacatctatgtcatatcct--gtttgcagGTCTTGCATCCACAAGCCATGAGACCCGCTAGAGAGAGTGATATTCCAGTTAGGGTCAAGAATTCTTATAATCCTGAAGCTCCTGGTACCCTCATCAATA
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-caacaccgacatgag---cagcatgattattgggtgcccagttgacatgacgtgctggatatcagatta-aatcttgtgtatgaattatttctctgatttgcagGTCCTGCATCCACAGTCTATGAGACCTGCTAGAGAAAGTGATATTCCTGTTAGGGTTAAAAATTCCTACAACCCTAAAGCTCCAGGTACTCTCATTGCTA
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G26300.1 (Glycine max), 3'ss of exon 9
-tggagccagccatgagaactaacaacattcttttatttctggtga-aacaaagaacactgatggattgtggttttacatctatgtcatatcctgtttgcagGTCTTGCATCCACAAGCCATGAGACCCGCTAGAGAGAGTGATATTCCAGTTAGGGTCAAGAATTCTTATAATCCTGAAGCTCCTGGTACCCTCATCAATA
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gtgaggagtatgatgtgtatcga-aagatagacttgtggcttgcgatatcagaataatcccatcaaaggtgagtcta-atatttcatttctctgattctcagGTTCTGCATCCACAGTCTATGAGACCTGCAAGAGAAAGTGATATTCCTGTTAGGGTTAAAAATTCTTACAATCCTAAAGCTCCAGGTACTCTCATCACCA
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G07300.1 (Glycine max), 3'ss of exon 8
tggagccagccatgagaa-ctaacaacattcttttatttctggtgaaacaaagaacactgatggattgtggttttacatctatgtcatatcctgtttgcagGTCTTGCATCCACAAGCCATGAGACCCGCTAGAGAGAGTGATATTCCAGTTAGGGTCAAGAATTCTTATAATCCTGAAGCTCCTGGTACCCTCATCAATA
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tgatgggcacaatgtgtatccaaagatagacttgtgcct-tgggatatcagaataatcccatcaaaggtgggtctaaatctttcatttctctgattctcagGTTCTACATCCACAGTCTATGAGACCTGCCAGAGAAAGTGATATTCCTGTTAGGGTTAAAAATTCTTACAACCCTAAAGCTCCAGGTACTCTCATCACCA
upper sequence: Vv01s0244g00140.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G27500.1 (Glycine max), 3'ss of exon 7
tggagccagccatgagaactaaca-acattcttttatttctggtgaaacaaagaacactgatggattgtggttttacatctatgtcat--atcctgtttgcagGTCTTGCATCCACAAGCCATGAGACCCGCTAGAGAGAGTGATATTCCAGTTAGGGTCAAGAATTCTTATAATCCTGAAGCTCCTGGTACCCTCATCAATA
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---atttacctagcagcaccgacatgagcagcatgattattgacatgacatgggctggatatcagattaaatcttgtgtatgaattatttatctgatttgcagGTCCTCCATCCACAGTCTATGAGACCGGCTAGGGAAAGTGATATTCCTGTTAGGGTTAAAAATTCATACAACCCTAAAGCTCCAGGTACTCTGATTGCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaaagaacactgatggattgtggttttacatctatgtcatatcctgtttgcagGTCTTGCATCCACAAGCCATGAGACCCGCTAGAGAGAGTGATATTCCAGTTAGGGTCAAGAATTCTTATAATCCTGAAGCTCCTGGTACCCTCATCAATA
cactgat putative branch site (score: 3)
tcctgttt putative PPT
ttttacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggagccagccatgagaactaacaacattcttttatttctggtgaaacaaagaacactgatggattgtggttttacatctatgtcatatcctgtttgcagGTCTTGCATCCACAAGCCATGAGACCCGCTAGAGAGAGTGATATTCCAGTTAGGGTCAAGAATTCTTATAATCCTGAAGCTCCTGGTACCCTCATCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - -ccagcca
- - - - - - - - - - aacaaca
- - - - - - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggt