1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcttcattttgatgagacttctcctaaatgccctctctgtcttgttggattcatatatataattaactgtttcactaaatatatgaataacatttttcagGGGCCACGATTGGGAAACGATATGCAAGAACCGATGAACTTGGTATACCCTTTGCAATCACCGTTGATTCAACATCATCGGTTACAATTCGGGAGAGGGA
species | Vitis vinifera |
transcript | Vv01s0150g00150.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
tggattcatatatataattaactgtttcactaaatatatgaataacatttttcagGGGCCACGATTGGGAAACGATATGCAAGAACCGATGAACTTGGTATACCCTTTGCAATCACCGTTGATTCAACATCATCGGTTACAATTCGGGAGAGGGA
gaataac putative branch site (score: 2)
catttttc CT-rich tract
atatatataattaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttcattttgatgagacttctcctaaatgccctctctgtcttgttggattcatatatataattaactgtttcactaaatatatgaataacatttttcagGGGCCACGATTGGGAAACGATATGCAAGAACCGATGAACTTGGTATACCCTTTGCAATCACCGTTGATTCAACATCATCGGTTACAATTCGGGAGAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - -cttctcc
- - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatata