Sequence
atgc intronic sequence ATGC exonic sequencegtatgtacgattcttgcaattaatgttctatgcatgattgtcaacttgaatttccagatctggatatggatattatggtgccaagttaataacatctgagcttttataacttggaatattctgtccagGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G059225_T02 (Zea mays), 3'ss of exon 8
gtatgtacgattcttgcaattaatgttctatgcatgattgtcaacttgaatttccagatctggatatggatattatggtgccaagttaataacatctgagcttttataacttggaatattctgtccagGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAG
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---------------------------------gtacataccctgtttagttgtcacttcacttcatgattccttatttacacagttgg-aatgccttcgtctt----atctgtatt--tatattcagGTGACTGCACTTTCAAATATCGAGGCTAAGAAAAGGTTTGAATTTTTGGAGGCTGTTAGTGGGACAATGGATGCTCATCTTCGTTATTTCAAACAA
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G28890.2 (Glycine max), 3'ss of exon 8
gtatgtacgattcttgcaattaatgttctatgcatgattgtcaacttgaattt-ccagatctggatatggatattatggtgccaagttaataacatctgagcttttataacttg--gaatattctgtccagGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAG
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------------------------------------gttagtaaattaatttgatcagaagtacataaataattactgttaccatgcatatgttttcacaaata----aactcgaagagtcttttgtccagGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAG
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G51810.1 (Glycine max), 3'ss of exon 8
gtatgtacgattcttgcaattaatgttctatgcatgattgtcaacttgaatttccagatctggatatggatattatggtgccaagttaataacatctgagcttttataacttggaatattctgtccagGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAG
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-----------------------------------gttagtaaattcatttgatcagaagcacaaataattattgt--taccatgaca-tatgttttcacaaataaactcgaagagtctttggtccagGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAG
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatgtacgattcttgcaattaatgttctatgcatgattgtcaacttgaatttccagatctggata-tggatattatggtgccaagttaataacatctgagcttttataacttggaatattctgtccagGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAG
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-------------------gtaattttctat---cgtttg--atcttgagtgttcaaatctacatacttgctgtccatacgtagtattgttgaagt--aatcatttggtttccctaat-ttatgctcagGTGACTGCTCTATCAAATGTTGAAGCTAAGAAAAGGTTTGAATTTTTGGAAGCAGTCAGTGGAACAATGGATGCACATCTTCGGTACTTCAAACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatggtgccaagttaataacatctgagcttttataacttggaatattctgtccagGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAG
ttctgtcc CT-rich tract
ttttataactt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtacgattcttgcaattaatgttctatgcatgattgtcaacttgaatttccagatctggatatggatattatggtgccaagttaataacatctgagcttttataacttggaatattctgtccagGTAACTACTCTTTCTAATGTTGAAGCAAAAAAAAGGTTCGAATTCTTGGAAGCAGTTAGTGGGACAATGGATGCTCACCTTCGCTACTTCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG