Sequence
atgc intronic sequence ATGC exonic sequencegtgagtgttggacataaatatcttttttatggcatttgtgtttcagtctacccaacttatgtcattttccaattccagATATATAAGACTAGTGAGGAAATATGGCTTGGAGATTTCACAACCTGGTTTAGAACCTAATAAAGGGTTAACATGGCAGATGACAAAGAGAAGAGGTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 8
-----------gtgagtgttgga---cataaatatcttttttatggcatttgtgtttcagtctaccca--acttatgtcattttccaattcc------agATATATAAGACTAGTGAGGAAATATGGCTTGGAGATTTCACAACCTGGTTTAGAACCTAATAAAGGGTTAACATGGCAGATGACAAAGAGAAGAGGTGAT
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agtggatcaaaataaataaaaaaatgtatatttatatacctaaggatttattttttttattttactcatgaagtttgatatgctctaatttctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAGAGAAGAGGTGAT
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 8
gtgagtgttggacataa-----atatcttttttatggcatttgt---gtttcagtctacccaacttatgtcatt----ttccaattccagATATATAAGACTAGTGAGGAAATATGGCTTGGAGATTTCACAACCTGGTTTAGAACCTAATAAAGGGTTAACATGGCAGATGACAAAGAGAAGAGGTGAT
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gtgagtattggatatgagagggatatttttttaaaagattttatttatttttaatcaaattttcatatgcctctcttatttcaagtgcagGTACATAAAACTGGTGAGGAAGCATGGGTTGGAGATTTCACAGCCTGGCTTAGAGCCTAATAAAGGGTTGACATGGCAAATGACAAAAAGAAGAGGTGAT
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 8
-----------gtgagtgttggacataaatatcttttt---tatggcatttgtgtttcagtctaccca--acttatgtcattttccaattcca------gATATATAAGACTAGTGAGGAAATATGGCTTGGAGATTTCACAACCTGGTTTAGAACCTAATAAAGGGTTAACATGGCAGATGACAAAGAGAAGAGGTGAT
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tgatagtggatccaaaaaaaaaacatgtatatttatatacataaggattttttttttaattttacttgtgaagtttgatatgttctaatttcaatcacagATACTTAAAACTGGTGAAGAAGCACGGGTTGGAGATTTCACAGCCTGGTTTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAGAGAAGAGGTGAT
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 8
gtgagtgttggacataa-----atatcttttttatggcatttgtgtttcagt-ctacccaa----cttatgtcatt----ttccaattccagATATATAAGACTAGTGAGGAAATATGGCTTGGAGATTTCACAACCTGGTTTAGAACCTAATAAAGGGTTAACATGGCAGATGACAAAGAGAAGAGGTGAT
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gtgagtattggatatgagagggattttttttttttaaatattttatttaatttctaatcaaatttcatatgcctctcttatttcaagtgcagGTACATAAAACTTGTGAGGAAGCATGGCTTGGAGATTTCACAGCCTGGCTTGGAGCCTAATAGAGGGTTGACATGGCAAATGACAAAAAGAAGAGGTGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttatggcatttgtgtttcagtctacccaacttatgtcattttccaattccagATATATAAGACTAGTGAGGAAATATGGCTTGGAGATTTCACAACCTGGTTTAGAACCTAATAAAGGGTTAACATGGCAGATGACAAAGAGAAGAGGTGAT
tcattttcc CT-rich tract
aacttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtgttggacataaatatcttttttatggcatttgtgtttcagtctacccaacttatgtcattttccaattccagATATATAAGACTAGTGAGGAAATATGGCTTGGAGATTTCACAACCTGGTTTAGAACCTAATAAAGGGTTAACATGGCAGATGACAAAGAGAAGAGGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG