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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcgtacaagtgacatgagttaattctctttatacttcaaaaataattgagctctcttttttgaccttgagttttctccttacagATGACTTTATGGTCTATGGCAAAGTCTCCACTAATGTTTGGTGGAGATGTGAGGGATCTCGACGACCCTACATACAAACTTCTTACAAATCCCATCCTGC

Basic information

species Vitis vinifera
transcript Vv01s0137g00630.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G13960.1 (Glycine max), 3'ss of exon 8
-----------------------gtatgtgcgtacaagtgacatgagttaattctctttatacttcaaaaata-attgagctctcttttttgaccttgagttttctccttacagATGACTTTATGGTCTATGGCAAAGTCTCCACTAATGTTTGGTGGAGATGTGAGGGATCTCGACGACCCTACATACAAACTTCTTACAAATCCCATCCTGC
                       | || ||| | |   | | ||   |  ||    |||  |||||  | ||  |||  | |    ||  |||     | || |   || |||||||||||| |||||| ||||||||||||| || |||| ||| || |||||| ||    ||||     | |||||| ||||| | |||||||| | |||||
gtattgataaaaaatgcataactgaat-tgctttcctat-atattcatgtatctattttgaacttcgtacatgcattatgatagacttagtgaatc--aattcttatctgacagATGACTTTGTGGTCTTTGGCAAAGTCTCCCCTTATGTATGGGGGGGATGTGCGGAGGATCGATCCAACCACATACGAACTTATCACAAATCCTACCCTGC

upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G43530.1 (Glycine max), 3'ss of exon 7
-------------------------gtatgtgcgtacaagtgacatgagttaattctctttatacttcaaaaataattgagctctcttttttgaccttgagttttctccttacagATGACTTTATGGTCTATGGCAAAGTCTCCACTAATGTTTGGTGGAGATGTGAGGGATCTCGACGACCCTACATACAAACTTCTTACAAATCCCATCCTGC
                         ||||     || |  |   | |||  ||  |   | |||  |  | |  |||| |    |  |   ||| |||   || |   || |||||||||||| |||| |||||||||||||||  | |||| ||| || ||| |  || |  | || |     ||       ||| | |||||||| | |||  
gtatgcatacgcacacaactgaatagtattactatatatattgga-gagggaagacatatgatatatgcatataaattaataaattctaactgagcttt--ttcttatctcacagATGACTTTGTGGTGTATGGCAAAGTCTCCCATTATGTATGGAGGGGATCTACGGAACATTGATGCTTGGACCCTTGGTCTTATCACAAATCCTACCCTTT

upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G05440.1 (Glycine max), 3'ss of exon 8
----gtatgtgcgtacaagtgacatgagttaattctctttatacttcaaaaataattgagctctc--------ttttttgaccttgagt--------tttctccttacagATGACTTTATGGTCTATGGCAAAGTCTCCACTAATGTTTGGTGGAGATGTGAGGGATCTCGACGACCCTACATACAAACTTCTTACAAATCCCATCCTGC
    | ||  ||  |||| |||  ||  ||| |     ||  |    | | | |  |||  | |         ||  |  |   | |||        | |   || |||||||||||| |||| |||||||||||||||  | |||| ||| || ||| |  || |  | || |     ||       ||| | |||||||| | |||  
gtatgcataagcacacaactgaattgtattactgtatattggagaggacagacatatgatatatgcatataaattaataaattctaagtgagcttattcttatctcacagATGACTTTGTGGTGTATGGCAAAGTCTCCCATTATGTATGGAGGGGATCTACGGAAAATTGATGCTTGGACCCTTGGTCTTATCACAAATCCTACCCTTT

upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G30770.1 (Glycine max), 3'ss of exon 9
------------------gtatgtgcgtacaagtgacatgagttaat---tct-ctttatacttcaaaaata-attgagctctcttttttgaccttgagttttctccttacagATGACTTTATGGTCTATGGCAAAGTCTCCACTAATGTTTGGTGGAGATGTGAGGGATCTCGACGACCCTACATACAAACTTCTTACAAATCCCATCCTGC
                   ||  || ||  |  | | ||   || ||   |||  |||   || |  | ||  |||  | |    | |  |    | | || |   ||  ||||||||||| |||||| |||| |||||||| || |||| ||| || ||||||||| |  | || |   | |||||  ||||| | |||||||| | |||||
gtattgataagaaaaagcataattgagttgatttcatatatattcatgtatctattttgatctgcgtacatgcattatgatagactctgagtgaatcaattcttatctggcagATGACTTTGTGGTCTTTGGCGAAGTCTCCCCTTATGTATGGGGGGGATGTGAGGAAGATTGATGCAACCACATATGAACTTATCACAAATCCTACCCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacttcaaaaataattgagctctcttttttgaccttgagttttctccttacagATGACTTTATGGTCTATGGCAAAGTCTCCACTAATGTTTGGTGGAGATGTGAGGGATCTCGACGACCCTACATACAAACTTCTTACAAATCCCATCCTGC
                            ttttgac  putative branch site (score: 3)
                                         ttttctccttac  putative PPT
     ttcaaaaataattga  TA-rich tract