Sequence
atgc intronic sequence ATGC exonic sequence...ctgcattgttgttgattccacatggtattccatgcatattatcatattacatgagtcgacattcttgtatgactatgaaaattcatggttctgtgcacagGCTTGTCATACAAAAGCTGAGTATGAGGAATACGGGGCAAGCATATGCCGAACAAATCCTGTCTTCAAGGGGATGTATTGATGTGAAGATTCTTTTGGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AC205703.4_FGT002 (Zea mays), 3'ss of exon 9
--------------------------------------------------------------------------ctgcattgttgttgattccacatggtattccatgcatattatcatattacatgagtcga-cat---tcttgta--tgactatgaaaattcatggttctgtgcacagGCTTGTCATACAAAAGCTGAGTATGAGGAATACGGGGCAAGCATATGCCGAACAAATCCTGTCTTCAAGGGGATGTATTGATGTGAAG-ATTCTTTTGGGC
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gtataccagctctcagtttatttgtgtacatacatatatagcattacaaaatttcttggaaagaaccagaacacctgaaatttctgaatgtgaacttgtctgcttggacaagttattacactaccttggtgaagtatgtgtgttgcaacttattatgggagttctt--tcctgtgcctagGCTTGCCACACAAAGGCAGAGTACGAGGAGTACGGTGCCAGCATCTGCCGAACGAATCCTGTCTTCAAAGGGATGTACTGACTCAGAGCGGTTCCCTGTG-
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G30630.1 (Glycine max), 3'ss of exon 8
-ctgcattgttgttg--attccacatggtat-tccatgcatattatcatattacatgagtcgacattcttgtatgactatgaaaattcatggttctgtgcacagGCTTGTCATACAAAAGCTGAGTATGAGGAATACGGGGCAAGCATATGCCGAACAAATCCTGTCTTCAAGGGGATGTATTGATGTGAAGATTCTTTTGGGC-
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atgccattctccttgggagtgtccataatttgttaatgcttcttttaatccttcc--aat--aaatctcgatgcaagttttacaatatctggtccattgtgcagGCTTGTCATACAAAGGCAGAATATGAGGAGTATGGAGCAAGCATTTGCCGGACAAATCCTGTTTTCAAGGGAATGTATTAA-ATCAACAACAAATTAGTTG
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G13810.1 (Glycine max), 3'ss of exon 8
--ctgcattgttgttgattccacatggtattccatgcatattatcatattacatgagtcgacattcttgtatgactatgaaaattcatggttctgtgcacagGCTTGTCATACAAAAGCTGAGTATGAGGAATACGGGGCAAGCATATGCCGAACAAATCCTGTCTTCAAGGGGATGTATTGATGTGAAGATTCTTTTGGGC
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aatgtcattctccttgggagtgcccataatttctta-atgtttctttaatccttccaataa-atctcgatgcaagttttaaaatttcgggtctaatgtgcagGCTTGTCATACAAAGGCAGAATATGAGGAGTATGGAGCAAGCATTTGCCGGACAAATCCTGTTTTCAAGGGAATGTATTAAATCAACGACAAATTAGTTG
upper sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 8
ctgcattgttgttgattccacatggtattccatgcatattatcatattacatgagtcgacattcttgtatgactatgaaaattcatggttctgtgcacagGCTTGTCATACAAAAGCTGAGTATGAGGAATACGGGGCAAGCATATGCCGAACAAATCCTGTCTTCAAGGGGATGTATTGATGTGAAGATTCTTTTGGGC
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--gtatgcaaactagttt---agagatccgctagtttgaagctaaacctcatggcttgatcgtgttttgaaacaagatgtatttttgttgttg----cagAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGAGCAAGCATATGCCGCACGAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAATAATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attacatgagtcgacattcttgtatgactatgaaaattcatggttctgtgcacagGCTTGTCATACAAAAGCTGAGTATGAGGAATACGGGGCAAGCATATGCCGAACAAATCCTGTCTTCAAGGGGATGTATTGATGTGAAGATTCTTTTGGGC
tatgaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgcattgttgttgattccacatggtattccatgcatattatcatattacatgagtcgacattcttgtatgactatgaaaattcatggttctgtgcacagGCTTGTCATACAAAAGCTGAGTATGAGGAATACGGGGCAAGCATATGCCGAACAAATCCTGTCTTCAAGGGGATGTATTGATGTGAAGATTCTTTTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-tgcattg
- - - - - - - - -ccacatg
- - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - -catgagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgg