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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattcccatttttagttgcacttttttctcttgttttagtagtataaactagatgatttgataacactaatttatgtgttttcacctctaacatggctttgctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTACAGAAACCTTTATTCATGGGCTAGATGAAAAG

Basic information

species Vitis vinifera
transcript Vv01s0127g00260.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00260.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G17010.2 (Glycine max), 3'ss of exon 7
------------------------gtacattcccatttttagttgcacttttttctcttgttttagtagtata-aactagatgatttgataacactaatttatgtgttttcacctctaacatggctttgct-ttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTACAGAAACCTTTATTCATGGGCTAGATGAAAAG
                         |  | |   ||||  ||    | | |  | |||    ||  |  | || ||||  || || |   |    || |  | |  |||  |   |   ||||   ||  | ||  ||| ||||| || |||||||||||| ||||||||||||| ||||||||| |||||||  | ||| |||||||  |||||||||||
gtgtgtttcttccctcaaaataatatcaactattatttgaaggatgaatatcatatctctaattcatcatgtataactgaataatgtttca----tagtaaaagaatttataaaccatgcatgttattaatatttgcagATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTACTACAGAGGCTTTTGTTCATGGATTAGATGAAAAG

upper sequence: Vv01s0127g00260.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G42140.2 (Glycine max), 3'ss of exon 6
------------------------gtacattcccatttttag--ttgcacttttttctcttgttttagtagtataaactagatgatttgataacactaatttatgtgttttcacctctaacatggctttgct-ttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTACAGAAACCTTTATTCATGGGCTAGATGAAAAG
                         |  | |   ||||  ||  |   | |  | |||||  ||      |||||| ||  || || |   |    || | || |  |||| |   |   ||||   ||  | ||  ||| ||||| || |||||||||||| ||||||||||||| ||||||||| |||||||  | || ||||||||  |||||||||||
gttggtttcttccctctaaagaatatcaactattatttgaaggatgaaaatcatatctctaattcatcatgtataa-ctcaataatgttgca----tagtataagaatttttaaaccatgcatgttattaatatttgcagATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTACTACAGAGGCTTTCATTCATGGATTAGATGAAAAG

upper sequence: Vv01s0127g00260.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G03530.1 (Glycine max), 3'ss of exon 7
gtacattcccatttttagttgcacttttttctcttgttttagtagtataa-actagatg---atttgataacactaa-tttatgtgt-tttcacctctaacatggctttgcttt--cacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTACAGAAACCTTTATTCATGGGCTAGATGAAAAG
||   |||      |    |  |          |  ||| |    ||||| |||| ||    |||| ||||    ||  | |||  | |||  |  ||||||| | ||   |||     || |||||  | |||||||||||| ||||||||||||| ||||||||| | || ||  | || ||||||||  |||||||||||
gtgggttctttccctctagtaaatgccaagtgttattttcaaggatataatactatatttctatttcataatgtaaaactgatggatattttgcggctaacattggttgaatttgttgtagATGGGGAGACATTGAATTTCCACTGCCATTTGGAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363218|gb|EC926793.1|EC926793
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|110730830|gb|EE108354.1|EE108354
EST:     GATATGAGAGGCGAGCTGGATGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTTCCA-TGCCATTTTGGAAAAGTTATGAGTCC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTT-CCAATGCCATTT-GGAAGAGTTATGAGTCC
EST: gi|71882514|gb|DT031569.1|DT031569
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|111125104|gb|EE253722.1|EE253722
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|351054175|gb|FQ450257.1|FQ450257
EST:     GATATGAGAGGCGAGCTGGATGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|71888760|gb|DT037815.1|DT037815
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|110730143|gb|EE106883.1|EE106883
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAGGAA                         GTGGGGCA-TATTGAATTTCCAATGCC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCC
EST: gi|110698225|gb|EE075525.1|EE075525
EST:     GATATGAGAGGCGAGCTGGATGATACTGCTGCTTTCTAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|349820930|gb|FQ408638.1|FQ408638
EST:     GATATGAGAGGCGAGCTGGATGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|351035742|gb|FQ463587.1|FQ463587
EST:     GATATGAGAGGCGAGCTGGATGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|349822202|gb|FQ412466.1|FQ412466
EST:     GATATGAGAGGCGAGCTGGATGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|110416323|gb|EC982295.1|EC982295
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|111125102|gb|EE253720.1|EE253720
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|71882170|gb|DT031225.1|DT031225
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|161718453|gb|FC065040.1|FC065040
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|351044803|gb|FQ449057.1|FQ449057
EST:     GATATGAGAGGCGAGCTGGATGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
EST: gi|161714091|gb|FC064386.1|FC064386
EST:     GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAA                         GTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC
genomic: GATATGAGAGGCGAGCTGGACGATACTGCTGCTTTCAAGAACTTCAAGAAgtacattccc ... gctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgataacactaatttatgtgttttcacctctaacatggctttgctttcacagGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTACAGAAACCTTTATTCATGGGCTAGATGAAAAG
                              ctctaac  putative branch site (score: 2)
                                         ctttgctttc  putative PPT
     ataacactaatttat  TA-rich tract