1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtttctttcttctgtttttttttcttaacatatacttttttctcatttcttttgtgaatcttctttaattcttgtgaataccttttgttttcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
species | Vitis vinifera |
transcript | Vv01s0026g01700.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|110693432|gb|EE069656.1|EE069656
genomic: AAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCANATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|161717886|gb|FC065984.1|FC065984
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|110379389|gb|EC944580.1|EC944580
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|46910317|gb|CN545692.1|CN545692
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|71884005|gb|DT033060.1|DT033060
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|71884658|gb|DT033713.1|DT033713
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|161718575|gb|FC069322.1|FC069322
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTEST: gi|161719703|gb|FC069425.1|FC069425
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATT
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTEST: gi|110722964|gb|EE099738.1|EE099738
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATT
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCCGEST: gi|110396076|gb|EC961751.1|EC961751
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|110361687|gb|EC925180.1|EC925180
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|22011799|gb|BQ796833.1|BQ796833
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|110713393|gb|EE089276.1|EE089276
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|46918277|gb|CN547606.1|CN547606
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATATAAGCAGEST: gi|161720924|gb|FC070664.1|FC070664
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG GATGGGAAGATAGGTTCATTGGAATAT
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATAT
tttcttttgtgaatcttctttaattcttgtgaataccttttgttttcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
ctttaat putative branch site (score: 4)
taccttttgttttc putative PPT
aatcttctttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctttcttctgtttttttttcttaacatatacttttttctcatttcttttgtgaatcttctttaattcttgtgaataccttttgttttcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - cttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttttg