Sequence
atgc intronic sequence ATGC exonic sequence...ctatcatggaatggctctactgcacatcagggcttgtaataggtaaacacaatgttctttttgtatggctatgagatttatagctagattgtatgttcagGAACTTCATTTACATGGAAATTCTATTGGAGATGAAGGAGTCCGTGTTTTGATGTCTGGATTATCTTCACATAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G03410.1 (Glycine max), 3'ss of exon 7
-----ctatcatggaatggctctactgcacatcagggcttgtaataggtaaacacaatgttctttttgtatggctatgagatttatagctagattgtatgttcagGAACTTCATTTACATGGAAATTCTATTGGAGATGAAGGAGTCCGTGTTTTGATGTCTGGATTATCTTCACATAAAG
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tctcacaatgacaaaatgttgcta-tgtacactagaagtatatctggctgtatgcggccttaaacaagcatg---atgtactctaaacctgaat-atatggacagGAACTTCATTTGCATGGGAATTCTATTGGAGATGAAGGAATCCGTTCTTTGATGACTGGGTTATCTTCACATAAAG
upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G04270.1 (Glycine max), 3'ss of exon 5
-ctatcatgg-aatggctctactgca--catcagggcttgtaataggtaaacacaatgttctttttgtatggctatgagatttatagctagattgtatgttcagGAACTTCATTTACATGGAAATTCTATTGGAGATGAAGGAGTCCGTGTTTTGATGTCTGGATTATCTTCACATAAAG
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cttatcacaatgacaatgctgctgcatccactagaagcatatctggttgtatgcagccttaaacaagcatgattt----accctgaacctcagtatatggacagGAACTTCATTTGCATGGGAATTCTATTGGAGATGAAGGAATCTGTTCTTTGATGACAGGGTTATCTTCACATAAAG
upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G10510.1 (Arabidopsis thaliana), 3'ss of exon 9
-----------------------------------------------------------------------------------ctatcatggaatggctctactgc-acatcagggcttgtaataggtaaaca--caatgttctttttgtatggctatgagatttatagctagattgtatgttcagGAACTTCATTTACATGGAAATTCTATTGGAGATGAAGGAGTCCGTGTTTTGATGTCTGGATTATCTTCACATAAAG
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gtacaaactttcctcatgtctctttcgatgtatatcgtgtgccatttctatattaaaagagacatttcatagttagatctgttatcttatatgatgcattaaaggtgatttctgatgtcatcagagacaaccaatgaataaaggtcatcaacagttgatttattcccttggcctttccacctgcagGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGGACTCGTGCTTTGATGGCTGGTCTATCTTCCCACAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacacaatgttctttttgtatggctatgagatttatagctagattgtatgttcagGAACTTCATTTACATGGAAATTCTATTGGAGATGAAGGAGTCCGTGTTTTGATGTCTGGATTATCTTCACATAAAG
tttttgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatcatggaatggctctactgcacatcagggcttgtaataggtaaacacaatgttctttttgtatggctatgagatttatagctagattgtatgttcagGAACTTCATTTACATGGAAATTCTATTGGAGATGAAGGAGTCCGTGTTTTGATGTCTGGATTATCTTCACATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - catggaa
- - - - - - - - - -ctgcaca
- - - - - - - - - - - - - - -gggcttg
- - - - - - - - - - - - - - - - - - - - - - -aacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgag