Sequence
atgc intronic sequence ATGC exonic sequencegtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 3'ss of exon 7
gtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
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----------------------------------------------------gtatgcatttaatcttacacgatcaatt-tatttttg-gcttctgtcttctga------atctagattccttacat---agtttcacatgtc--ctgcagCTCACCTTTCGCCATATGCTGCCAAACTTTAATGAGTGTTGGTGGGATAGCATCGTACTAGACATATTAATCTGCAATTGGTTTG
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 7
gtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaag--aatgtgctcatg-tttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
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-----------------------------------------------------------gtatactctttatgttgtggtcaaataactcttgacttgtgctttccaa------acccaggttcc-taatgt--agtgttacatgt--attgcagCTCACTTTTCGCCATATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGCATTGTCCTAGACATATTGATCTGCAATTGGTTTG
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G095757_T02 (Zea mays), 3'ss of exon 7
gtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
| || | |||| ||| || ||| | | | | | || | ||| || |||| ||| || ||||| ||||| || |||||||| ||||| ||||||||||| |||||||| || ||| |||| ||||| || | |||||||||||||
------------------------------------------------------------------gtatactctttttgttgtggtcaaattcctgacttgtgctttccagactcaggttcctaatgtagagttgtatgtgctg----cagCTCACTTTTCGTCATATGTTGCCAAATTTCAATGAGTGCTGGTGGGATAGCATTGTCCTAGACATATTGATATGCAATTGGTTTG
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 10
gtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgac--tgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
|| || | |||||| | | | | |||| | | ||||| |||||| | || || | || ||| | ||||| || | | | |||||| || || | | | | | |||| | ||||| |||||| || || ||||| ||||| ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||
gtaagccctt--atctgattaatacactccg-attttttcacataggt----gtggtta--tgggttagtgcatccataaa---gcttgtttttcttttgatatatctatatcgtttgaattgcttaca-taacatctgtgttgtaatcttcagTATACTTTTCGTCACATGTTGCCAAATTTCAATGAGTGCTGGTGGGACAGTATTATTCTTGACATTTTGATCTGCAATTGGTTTG
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 8
gtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
|| | | | || |||||| | | | || |||| | | ||||| || | || | || || ||| | | | || || | | | || ||||| || || | | | | ||| || ||||| ||||| || || ||||| ||||| ||||| ||||| ||||||||||||||||| || ||||| || |||||||||||||||
gtaa--tccctgatctgattaatacactctg-attttttcacataggt-gtggttgtgggttag---tgcatccgtaaagcttgattttttgttttgatatatctatatct-tttgaattgcttacataccattctgtgttggcatcttcagTACACTTTTCGTCACATGTTGCCAAATTTCAACGAGTGCTGGTGGGACAGTATTATTCTTGACATCTTGATCTGCAATTGGTTTG
upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G15110.1 (Arabidopsis thaliana), 3'ss of exon 8
gtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaa-gttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
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-------------------------------------------------gttggtctttgtcttcgttttct-tatattacaggttccaatttgatatatacaaaaatatcgcttcgcctgtgtcaccgaaaagttatatttatgttctccagGTTACTTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGTATTGTTCTTGATATCTTGATATGCAACTGGTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110360098|gb|EC922718.1|EC922718EST: ATGGGTGCTGTCAATTGGATTTGAGCTAATGGAG CTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGT
genomic: ATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttct ... tcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
aactgac putative branch site (score: 2)
tataaagttaagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctaccttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcagCTTACTTTCCGCCATATGTTACCAAACTTCAATGAGTGTTGGTGGGACAGTATTATCCTCGACATTTTAGTCTGCAATTGGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG