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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttaagtatacttttatgtccagttgcctgccttagttttttatttgttataataaattttgcattgaattttactatatattcattgcctctttcagGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC

Basic information

species Vitis vinifera
transcript Vv01s0011g03350.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 3'ss of exon 8
gtaggttttaagtatacttttatgtccagttgcctgccttagttttttatttgttataataaattttgcattgaattttactatatattcattgcct------ctttcagGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC
       || |  || |||  || |    ||   |    | ||| | || |     | ||    | | || | ||  |   | |  |||  ||| ||        || |||| |||||||| || ||||| ||||| |||||||||||||| ||||| ||| || |||| |  || ||  ||||||| |||||||||||||| || ||||
-------ttgaacatgcttgaatattt--ttatttatgcttgttatatact-acagtcattgtatctacagtaaacatcctttttaattttttgtcttgatattctttagGTGAATGAGGCTAAGAATGTGCTGAAGCTCTGTGATTTTGGCAATGCAATGCTTGCTGGAATGAACGAGGTTACACCTTATCTTGTGAGCCGTTTCTATC

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G151236_T03 (Zea mays), 3'ss of exon 7
gtaggttttaagtatacttttatgtccagttgcctgccttagttttttatttgttataataaattttgcattgaattttactatatattcattgcctctttc--agGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC
     || | | ||||   |   |  | ||      ||      |    ||| || |  | || ||  ||  |  | ||||| | |   |||||| | |  |  |||| |||||||| || ||||| || || || ||||||||||| ||||| ||| || ||||||  |||||| |||| || |||||||| ||||| || ||||
----cttcttaatataagctcgggggctgtcttacccccgcaggtcgagttttttttttttaaattaacaccgtttattactgtgt--ccattgcttgtaccctagGTGAATGAGGCTAAGAATGTGCTCAAGCTATGTGATTTTGGGAATGCTATGCTTGCTGGTATGAATGAAGTTACGCCTTATCTTGTTAGCCGTTTCTATC

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G24820.2 (Glycine max), 3'ss of exon 10
gtaggttttaagtatacttttatgtccag-ttgcctgcctt-agttttttatttgttat-------aataaat-tttgcattgaattttactatatattcattgcctctttc----agGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC
||| |  | ||  ||||| || |||  || |||  |   || |   |||| |||||||        || |||| | |   ||  |   |    |   |  ||| |||||||     ||||||||||||| || |||||  |||| || ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||
gtatgcctaaa--atactgttgtgtttagattgtttcttttcaaaattttgtttgttaatttcaagaagaaatatctattttctaacatttagttcttcaatttcctcttttgacaagGTAAATGAGGCTAAGAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATC

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 10
-------------------------------gtaggttttaagtatacttttatgtccagttgcctgccttagtttttt--atttgttataataaatttt--gcattgaattttactatata-ttcattgcctctttcagGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC---------
                               ||   |||| |    | | |||  |  | |||     ||   | || |  |   |  |||   | ||||  | | | | |||  || |  |      |   |    ||||| || ||||| ||||||    | ||  | ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||         
gtatgaaaaattaatatttttttgttagattgtttcttttcaaagaaatattagttttatttgttgatctgcctcttctgaagaagaaatatccatttttccgtacttattttcccttttcaacctcctatttgcaccaggtgaa-gagGCAAAAAATACTTTTAAGTTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTG

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G42220.1 (Glycine max), 3'ss of exon 13
gtaggttttaagtatacttttatgtcca--gttgcctgccttagttttttatttgttataataaattttgcattgaattttactatatattc--attgcctctttc----agGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC
||| |  | || ||   || | | |  |  ||| | |  | ||||||| |   | | |  |  || | |  |||   |   | |   |  |   ||| |||||||     ||||||||||| | ||||||||  |||| || ||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||
gtatgcctaaattactgttgtgtttagattgtttcttttcctagttttgttaatttcaagaagaaatatctattatctaacatttagttcttcaatttcctcttttgataagGTAAATGAGTCTAAAAATGTTTTGAAGCTTTGTGACTTTGGCAATGCCATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATC

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaggttttaagtatacttttatgtccagttgcctgccttagttttttatttgttataataaattttgcattgaattttactatatattcattgcctctttcagGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC
                          ||||  |     | | |  |||   | |  || | ||||    |     | | ||| |    || |||  | |  ||||| |||||||  ||||||||| | || || ||||||||||||||||| |||||| | || ||||| ||| ||||||| |||||||| || ||||||||  
------------------------gtcagtcacacttttcattggttt---tctcctacttaattcaatagctt-tctaactgttgggtctttgattgtc-cagGTCAATGAGGGGAAAAATGTCTTAAAGCTTTGTGATTTTGGTAATGCAATGTTTGCAGGCAAAAACGAAGTTACACCGTATCTTGTTAGTCGCTTTTACA

upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaggttttaagtatacttttatgtccagttgcctgccttagttttttatttgttata-ataaattttgcattgaattttactatatattcattgcctctttcagGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC
                   | |  |  | ||| |||  ||  | |  |  ||| |  | |||||||||      || ||  ||     ||| |||  | |  ||||| |||||||  | |||     | || || ||||| ||||||| ||| |||||| |||||| ||| ||| |||||||||||||||| || ||||| ||  
------------------gtaagctatacttgtctgtgtttttctcctgcttgatgcacataaatttt------aactt--ctggtcgttccttgattatc-cagGTGAATGAGGGAAGAAACACGTTAAAGCTTTGTGACTTTGGTAGTGCAATGTTTGCTGGTACAAACGAAGTTACACCATATCTTGTTAGTCGCTTCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttataataaattttgcattgaattttactatatattcattgcctctttcagGTAAATGAGGCCAAAAATGTCCTGAAACTCTGTGATTTTGGTAATGCCATGTTTTCTGGTAAAAATGAAATTACACCATATCTTGTGAGCCGCTTTTATC
                                      ttcattgcctctttc  CT-rich tract
     tataataaattttgca  TA-rich tract