1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaatatctgttttactttaatttaaatctatagcgatacagatcactactggtgaactttatctccttgtttatgcatttaggagtgctcattagtttaaattgatcctactttgttgaatcagCTTTAAAATCTTCAAGATTACTTGAAGATATGGCCACAAGAGGAGTCAAGTACTTAGATTGCTATGGAGTTGACAATGCACTG
species | Vitis vinifera |
transcript | Vv01s0011g01420.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTAGCTAAAGCTCCAGATGGGAATTGGAGGAGTATATTCCG CTTTTAAATACTTCEST: gi|110401181|gb|EC967782.1|EC967782
genomic: GTAGCTAAGGCTCCAGATGGAAAT-GGAGGAGTATATTCAGgtaatatctg ... gttgaatcagCTTTAAAAT-CTTC
EST: GTAGCTAAGGCTCCAGATGGAAATGGAGGAGTATATTCAG CTTTAAAATCTTCAAGATTACTTGAAGATATGGCCACAAGAGGAGTCAAGTEST: gi|161713618|gb|FC063422.1|FC063422
genomic: GTAGCTAAGGCTCCAGATGGAAATGGAGGAGTATATTCAGgtaatatctg ... gttgaatcagCTTTAAAATCTTCAAGATTACTTGAAGATATGGCCACAAGAGGAGTCAAGT
EST: GTAGCTAAGGCTCCAGATGGAAATGGAGGAGTATATTCAG CTTTAAAATCTTCAAGATTACTTGAAGATATGGCCACAAGAGGAGTCAAGT
genomic: GTAGCTAAGGCTCCAGATGGAAATGGAGGAGTATATTCAGgtaatatctg ... gttgaatcagCTTTAAAATCTTCAAGATTACTTGAAGATATGGCCACAAGAGGAGTCAAGT
tttatgcatttaggagtgctcattagtttaaattgatcctactttgttgaatcagCTTTAAAATCTTCAAGATTACTTGAAGATATGGCCACAAGAGGAGTCAAGTACTTAGATTGCTATGGAGTTGACAATGCACTG
aattgat putative branch site (score: 4)
ctttgtt putative PPT
attagtttaaattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatctgttttactttaatttaaatctatagcgatacagatcactactggtgaactttatctccttgtttatgcatttaggagtgctcattagtttaaattgatcctactttgttgaatcagCTTTAAAATCTTCAAGATTACTTGAAGATATGGCCACAAGAGGAGTCAAGTACTTAGATTGCTATGGAGTTGACAATGCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG