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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttgcttatcacagagatgaatggaagttatgaaattcttgtttcttggtcgaaattctgattatttggtttcagATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAAGTCGGTCTAACCAAATTTTTGTCTGATCTATTTTGGATTGGAATGTTTT

Basic information

species Vitis vinifera
transcript Vv01s0011g00600.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884544|gb|DT033599.1|DT033599
EST:     CATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTG                         ATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAA
genomic: CATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTGgtacgtttgc ... ttggtttcagATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAA
EST: gi|110365764|gb|EC929197.1|EC929197
EST:     CATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTG                         ATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAA
genomic: CATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTGgtacgtttgc ... ttggtttcagATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAA
EST: gi|351034668|gb|FQ458025.1|FQ458025
EST:     CATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTG                         ATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAA
genomic: CATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTGgtacgtttgc ... ttggtttcagATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAA
EST: gi|22012480|gb|BQ797514.1|BQ797514
EST:     CATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTG                         ATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAA
genomic: CATACACTTCAATAATCGCCCTCCTGTTTTGCATCCCACCGGCAGTACTGgtacgtttgc ... ttggtttcagATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggaagttatgaaattcttgtttcttggtcgaaattctgattatttggtttcagATTGAGGGGCCTCAGCTGATGCAGTATGGTTTCAGGGATGCAATTGCTAAAGTCGGTCTAACCAAATTTTTGTCTGATCTATTTTGGATTGGAATGTTTT
                                   ttctgat  putative branch site (score: 3)
                                aaattctgattattt  TA-rich tract