1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagctagtgcctatgaaccataggctagatttttcttgttagaatcctttttatttgctcaaaaacttgggtatgtgctattgctcattgtgctctacagGTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTG
species | Vitis vinifera |
transcript | Vv01s0011g00550.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAG GTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGCEST: gi|110361486|gb|EC924960.1|EC924960
genomic: TGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAGgtatgcagga ... tgctctacagGTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGC
EST: TGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAG GTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGCEST: gi|110361507|gb|EC924986.1|EC924986
genomic: TGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAGgtatgcagga ... tgctctacagGTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGC
EST: TGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAG GTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGCEST: gi|349830592|gb|FQ416890.1|FQ416890
genomic: TGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAGgtatgcagga ... tgctctacagGTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGC
EST: TGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAG GTAAAGAAGAAGACACTTAT
genomic: TGAATTTTATGATTAGTGGGGGTTATAATGTTAGTTCTCAGATACAACAGgtatgcagga ... tgctctacagGTAAAGAAGAAGACACTTAT
cctttttatttgctcaaaaacttgggtatgtgctattgctcattgtgctctacagGTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTG
aaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagctagtgcctatgaaccataggctagatttttcttgttagaatcctttttatttgctcaaaaacttgggtatgtgctattgctcattgtgctctacagGTAAAGAAGAAGACACTTATCATATGGGGTGAGGATGACCAGATAATCAGCAACAAGCTTGCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -tgcctat
- - - - - - - -aaccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc