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...tattgtcagtggaattgaaaatacttctgctgaataagaataatgcacattgtgttgatatttctcatcaaaaatctaattttacactcttcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG
species | Vitis vinifera |
transcript | Vv01s0011g00500.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCA CTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCEST: gi|71879732|gb|DT028787.1|DT028787
genomic: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCAgtaagttttt ... tcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTC
EST: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCA CTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCEST: gi|71877796|gb|DT026851.1|DT026851
genomic: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCAgtaagttttt ... tcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTC
EST: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCA CTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCEST: gi|71878342|gb|DT027397.1|DT027397
genomic: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCAgtaagttttt ... tcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTC
EST: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCA CTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCEST: gi|71878071|gb|DT027126.1|DT027126
genomic: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCAgtaagttttt ... tcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTC
EST: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCA CTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCEST: gi|71879077|gb|DT028132.1|DT028132
genomic: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCAgtaagttttt ... tcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTC
EST: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCA CTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCEST: gi|71880088|gb|DT029143.1|DT029143
genomic: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCAgtaagttttt ... tcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTC
EST: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCA CTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTC
genomic: TTCAGCATTTGTGTTCATAGTTTGCTTAGGGAGCCTATCAAGATCGTTCAgtaagttttt ... tcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTC
cacattgtgttgatatttctcatcaaaaatctaattttacactcttcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG
atctaat putative branch site (score: 3)
cactcttc putative PPT
atatttctcatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtcagtggaattgaaaatacttctgctgaataagaataatgcacattgtgttgatatttctcatcaaaaatctaattttacactcttcaaaattagCTGGTGTTGCAAGTGGAGCAACTAGAGCTGCATTGACACAACATTTTGCTCTTCAAAATAATGCTGCAGATATATCTGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - gaaaata
- - - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - -ataagaa
- - - - - - - - - - - - - - - - - - - - -aatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaatc