Sequence
atgc intronic sequence ATGC exonic sequence...tgttctactgaccattaaacatcattcttccttgaagttgtacccgaatctttcacatgagatggtaagcattctacaattcacattttgtgtttttcagGTTGACTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTAGGTGGCATTGGCTATTTCTATGGCCAATCAAAAATTTCACTCCCAAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g69210.1 (Oryza sativa), 3'ss of exon 8
---------tgttctactgaccattaaacatcattcttccttgaagttgtacccgaatctttcacatgagatggtaagcattctacaattcacattttgtgtttttcagGTTGACTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTAGGTGGCATTGGCTATTTCTATGGCCAATCAAAAATTTCACTCCCAAAAA
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aaaagctatttttcccctggaagataagtagtgtgactggctgcataatcagaagaaagtttgtgatggagcagttgatattat-tgtttcac--------tgatgcagATTAATCCCAAAGAATTATCTGTTGGTGTTGCTGCTTTATCAAATCTTCTTGGTGGAATTGGCTATTTCTATGGGCAGTCAAAAATTGCACTTCCAAAAG
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G27890.1 (Glycine max), 3'ss of exon 8
-----------------------------------------------------------------------tgttctactgaccattaaacatcattcttccttgaagt-tgtacccgaatctttcacatgagatggtaagcattctacaattcacattttgtgtttttcagGTTGACTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTAGGTGGCATTGGCTATTTCTATGGCCAATCAAAAATTTCACTCCCAAAAA
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gtaccaactttattgtcctttgacttgttttttttttttaactatctcatattgaatgatttatagttcttttttcgtcttttgatgtgttatgaatctttcataattcatttaattgagtaaattgatttagaagttaa-caaattatttatcatagtagtggatttccagGTGGATTCAGAATCCATATCTGTTGGTAAGGCAGCTGTTGGAAACTTGTTAGGTGGCATTGGCTACTTCTATGGTCAGTCAAAGATTGCTGTTTCAAGAA
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G10870.1 (Glycine max), 3'ss of exon 8
tgttctactgaccattaaacatcattcttccttgaagttgtacccgaatc------tttcacatgagatggtaagcattctacaattcacattttgtgtttttcagGTTGACTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTAGGTGGCATTGGCTATTTCTATGGCCAATCAAAAATTTCACTCCCAAAAA
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-----aaccctatattcttcttgtttcatcttttgatgtgttctggatttctcaaatttcatttgcttgaataaatttgtttagaagcttatcct-tgatgtccagGTGGATTCCGAAGCCTTATCTGTTGGTAAGGCTGCTGTTGGAAACTTATTAGGTGGCATCGGCTACTTCTATGGCCA-----------------------
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G27900.1 (Glycine max), 3'ss of exon 8
-tgttctactgacca-ttaaacatcatt--cttccttgaagttgtacccgaatctttcacatgagatggtaagcattctacaattcacattttgtgtttttcagGTTGACTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTAGGTGGCATTGGCTATTTCTATGGCCAATCAAAAATTTCACTCCCAAAAA
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atgtgttctggatctctcaaatttcatttgcttgagtaaatttgt-ttagaagcttatccttga--tgg-aaataaattatttatcatagtagtggatttccagGTGGATTCCGAAGCCTTATCTGTTGGTAAGGCTGCTGTTGGAAACTTATTAGGTGGAATCGGCTACTTCTATGGCCAGTCAAAGATTGCTCTTTCAAGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30299826|gb|CB976620.1|CB976620EST: AAAATGAATTTGACAACAAATTTGAGAAATGCTTCAATCTTACCAGCAAG GTTGATTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTA
genomic: AAAATGAATTTGACAACAAATTTGAGAAATGCTTCAATCTTACCAGCAAGgtatttgtcc ... tgtttttcagGTTGACTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatctttcacatgagatggtaagcattctacaattcacattttgtgtttttcagGTTGACTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTAGGTGGCATTGGCTATTTCTATGGCCAATCAAAAATTTCACTCCCAAAAA
tgtttttc CT-rich tract
tacaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttctactgaccattaaacatcattcttccttgaagttgtacccgaatctttcacatgagatggtaagcattctacaattcacattttgtgtttttcagGTTGACTCTGAATCTTTGATTGTTGGTAAGGCTGCTATTGGAAATATGTTAGGTGGCATTGGCTATTTCTATGGCCAATCAAAAATTTCACTCCCAAAAA
- - - -ctgacca
- - - - - - - - aaacatca
- - - - - - - - - - - - - -ttccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattca