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...gcatgctcttcttgttaaagttcttggcttaatctcccatgtgattaataactgaaaggcttttagcaaaatttattgatatttgctttccttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGGGCTCATGCTGATATACTTTTGCCATTTTTTTACAGCTATAGTTG
species | Vitis vinifera |
transcript | Vv01s0010g00950.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAATAAAATGGACCTACAGAGGEST: gi|351043445|gb|FQ444045.1|FQ444045
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAA-TGGACCTACAGAGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGGEST: gi|349829684|gb|FQ421202.1|FQ421202
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAAATAA-TGGACCTACAGAGGEST: gi|349824351|gb|FQ417738.1|FQ417738
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAA-TAAATGGACCTACAGAGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGGEST: gi|110708043|gb|EE085132.1|EE085132
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATAACCTTATTCTTCCAGCAATAAATGGACCAACAGAGGGEST: gi|110694296|gb|EE071276.1|EE071276
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGGEST: gi|351040557|gb|FQ434690.1|FQ434690
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGAACTACEST: gi|351014955|gb|FQ444244.1|FQ444244
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTAC
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGGEST: gi|33409238|gb|CF214865.1|CF214865
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCGATATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGGEST: gi|351029069|gb|FQ435269.1|FQ435269
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAAAGGEST: gi|110687900|gb|EE065836.1|EE065836
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTT-CACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGG
EST: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACA CTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGG
genomic: TGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt ... cttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGG
taataactgaaaggcttttagcaaaatttattgatatttgctttccttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGGGCTCATGCTGATATACTTTTGCCATTTTTTTACAGCTATAGTTG
tatttgctttcctt CT-rich tract
ttttagcaaaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgctcttcttgttaaagttcttggcttaatctcccatgtgattaataactgaaaggcttttagcaaaatttattgatatttgctttccttggtccagCTTTTTCACCAATACCCTTATTCTTCCAGCAATAAATGGACCTACAGAGGGGCTCATGCTGATATACTTTTGCCATTTTTTTACAGCTATAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-catgctc
- - - - - - - - - - ttcttgg
- - - - - - - - - - - - - - - - tctccca
- - - - - - - - - - - - - - - - - - - - - - - - -aactgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa