Sequence
atgc intronic sequence ATGC exonic sequencegtatgttgtctaacatttctttttcccctatatattagataccaacttgattacctgaacaaaaaatgttggccttgctcttcagCTTATTTATGGCAATTGATGCGATTCAACATCCTCCAACTTCTAAAGAACTTGAGGTTTCATTCCCATGGGAAGGAAATCATTGATGCTGATATTCTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s1365g00010.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G45800.1 (Glycine max), 3'ss of exon 10
------------------------------------------------------------------------------------------------gtatgttgtctaacatttctttttcccctatatattagataccaacttgattacctgaacaaaaaatg-------ttggccttgctcttcagCTTATTTATGGCAATTGATGCGATTCAACATCCTCCAACTTCTAAAGAACTTGAGGTTTCATTCCCATGGGAAGGAAATCATTGATGCTGATATTCTTGA
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gtatgttgacctgcaaattatgtactgtaacttggtagtgaatcaattgatctattgaacatatgccaatcaattcattgttcttgtataccttctatgaaacctttcagaatttgtatttcctcagatgctagaggatgcttacaccatctaatcctaatatggttgattttatcttaactcttcagCATATTTGTGGCAATTGATGCGATACAACATCCTTCAACTTCTAAAGAACCTGAGATTTCACTCTCATGGGAAGGAAATAATTGATGCTGATATTCTGCG
upper sequence: Vv00s1365g00010.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA03G22450.1 (Glycine max), 3'ss of exon 11
----------------------------------------gtatgttgtctaacattt----ctttttcccctatatatta-gataccaacttgattacctgaacaaaaaatgttggccttgctcttcagCTTATTTATGGCAATTGATGCGATTCAACATCCTCCAACTTCTAAAGAACTTGAGGTTTCATTCCCATGGGAAGGAAATCATTGATGCTGATATTCTTGA
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gtaggttgacctccaaattatgtgctgttacctagttgtagtaaatcaatttatctattgagcatactccattaaattcaatgatcccacataaagagtctaaatcaaatactatttgattattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTTGAGATTTCATTCTCGAGGGAAGGAAATAAATGATGCTGATATTTTAGA
upper sequence: Vv00s1365g00010.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G09360.1 (Glycine max), 3'ss of exon 10
--------------------------------------------gtatgttgtctaac--atttctttttcccctatatattagataccaacttgattacctgaacaaaa---aatgttggccttgctcttcagCTTATTTATGGCAATTGATGCGATTCAACATCCTCCAACTTCTAAAGAACTTGAGGTTTCATTCCCATGGGAAGGAAATCATTGATGCTGATATTCTTGA
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gtaggttgacctccaaatttcgtgctgttactacttaccttgtagttaatcaattaatctgttgatcataccccactaaattcaatgatcacaca--tacagagactaaatcaaatactatttgatttttttagCTTATTTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTTGAGATTTTACTCTCGTGGAAAGGAAATAAATGATGCTGATATTTTAGA
upper sequence: Vv00s1365g00010.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G48460.1 (Arabidopsis thaliana), 3'ss of exon 10
--gtatgttgtctaacatttctttttcccctatatattagataccaacttgattacctgaacaaaaaatgttggccttgctcttcagCTTATTTATGGCAATTGATGCGATTCAACATCCTCCAACTTCTAAAGAACTTGAGGTTTCATTCCCATGGGAAGGAAATCATTGATGCTGATATTCTTGA
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gtaaaaatttctcaactctataattgtgtgtttttatgaatcaccaactttaata-----atgagttgttttgaaaccatcttccagCATACTTATGGCAATTGATGAGATACAACATCCTGCAACTTCTTAAGAACTTGAGACTACATTCAAACGGCAAAGAGATAACAGACGCTGATATATTGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatattagataccaacttgattacctgaacaaaaaatgttggccttgctcttcagCTTATTTATGGCAATTGATGCGATTCAACATCCTCCAACTTCTAAAGAACTTGAGGTTTCATTCCCATGGGAAGGAAATCATTGATGCTGATATTCTTGA
acttgat putative branch site (score: 5)
ccttgctcttc putative PPT
aacaaaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttgtctaacatttctttttcccctatatattagataccaacttgattacctgaacaaaaaatgttggccttgctcttcagCTTATTTATGGCAATTGATGCGATTCAACATCCTCCAACTTCTAAAGAACTTGAGGTTTCATTCCCATGGGAAGGAAATCATTGATGCTGATATTCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT