Sequence
atgc intronic sequence ATGC exonic sequence...tctgcccttgcaccatgaagatgttcttatatatttattgaaaaatgtcctccttttggtcgttttaccagatattctctcctcttctcttcttttctagGCACCTCTTAATTCCGTTACATCAATAATAGATGGCTTGAAGAGACTATACAATGAAAAGTTAAAGCCATTGGAAGTCACCTACCGCTATAATGATTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 5
tctgcccttgc-accatgaagatgttcttatatatttattgaaaaatgtcctccttttggtcgttttaccagatattctctcctctt-------ctcttcttttctagGCACCTCTTAATTCCGTTACATCAATAATAGATGGCTTGAAGAGACTATACAATGAAAAGTTAAAGCCATTGGAAGTCACCTACCGCTATAATGATTTTG
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----tttttgttaccgtt----tattctcaaattactgcatgcagtcttgcttaattttattttgttgctagatattttctaatcctaaaaagtttgccttttcttagTTATCTCTGAATTCAGTTACATCAATCATTGATGGCTTAAAGAGATTGTATATTGAAAGGTTAAAGCCCTTGGAAGTTGCTTATCAATACAATGATTTTG
upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G01310.1 (Glycine max), 3'ss of exon 7
tctgcccttgcaccatgaagatgttcttatatatttat-tgaaaaatgtcctccttttggtcgttt---taccagatattctctcctc------ttctcttcttttctagGCACCTCTTAATTCCGTTACATCAATAATAGATGGCTTGAAGAGACTATACAATGAAAAGTTAAAGCCATTGGAAGTCACCTACCGCTATAATGATTTTG
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----------atttgtaaactcatttttttcaagctatattacatatgccttgctttatttcagttgtttgtcaggtatactctgatcatgaaattttggtctattatagTTACCTCTAAGTGCAGTTACATCAATAATTGATGGCTTGAAGAGATTGTATGTGGAGAGGCTTAAGCCATTGGAGGTCACCTATCGATTCAATGATTTTG
upper sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 3'ss of exon 7
----tctgcccttgcaccatgaagatgttcttat-atatttattgaaaaatgtcctccttttggtcgttttaccagatattctctcctcttctcttcttttctagGCACCTCTTAATTCCGTTACATCAATAATAGATGGCTTGAAGAGACTATACAATGAAAAGTTAAAGCCATTGGAAGTCACCTACCGCTATAATGATTTTG---
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gttggttgctgtttt-ctttattgctgcaaatgtgattctttttcaaatatggagtcatgt-----gatttaacgagtattttgtca----cttttcatatccagCCACAAGTAAATGTGGTGACA---ATTGTTGATGGCTTGAAAAGATTGTACACTGAAAAGCTAAAGCCTTTGGAAGTCACATATCGGTTCAATGATTTTGCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcctccttttggtcgttttaccagatattctctcctcttctcttcttttctagGCACCTCTTAATTCCGTTACATCAATAATAGATGGCTTGAAGAGACTATACAATGAAAAGTTAAAGCCATTGGAAGTCACCTACCGCTATAATGATTTTG
ttttaccagatattct CT-rich tract
agatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctgcccttgcaccatgaagatgttcttatatatttattgaaaaatgtcctccttttggtcgttttaccagatattctctcctcttctcttcttttctagGCACCTCTTAATTCCGTTACATCAATAATAGATGGCTTGAAGAGACTATACAATGAAAAGTTAAAGCCATTGGAAGTCACCTACCGCTATAATGATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
tctgccc
- - - - - - ccatgaa
- - - - - - - - - - - - - - - - - - - tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -tcctcct