1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtattcctacaaaatcttgctttcttttctttcccttcatgttagtaaaccaaatatgaaatattccatggtatacaagtgaaattcatccaaaaatcttttttggtctaatgaaatattgtatgaactcattgctaaatcacttctttctaccattttgaacagAATATTTTACGGACATTTGCTATGTCACGGTATCAAAAACATGCGACCTAATTGGCATCATCAAGAAACTATTTTGGCATAATGCTGAACGAGTGCAGGG
species | Vitis vinifera |
transcript | Vv00s0487g00030.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGGAAAACCACTTTGGCTAAAAGGCTTTGTCACGACCAACAAGTCAAGG AATATTTTACGGACATTTGCTATGTCACGGTGTCAAAAACATGCGACCTAAEST: gi|161709049|gb|FC060962.1|FC060962
genomic: TGGGAAAACCACTTTGGCTAAAAGGCTTTGTCACGACCAACAAGTCAAGGgtattcctac ... ttttgaacagAATATTTTACGGACATTTGCTATGTCACGGTATCAAAAACATGCGACCTAA
EST: TGGGAAAACCACTTTGGCTAAAAGGCTTTGTCACGACCAACAAGTCAAGG AATATTTTACGGACATTTGCTATGTCACGGTGTCAAAAACATGCGACCTAA
genomic: TGGGAAAACCACTTTGGCTAAAAGGCTTTGTCACGACCAACAAGTCAAGGgtattcctac ... ttttgaacagAATATTTTACGGACATTTGCTATGTCACGGTATCAAAAACATGCGACCTAA
atgaaatattgtatgaactcattgctaaatcacttctttctaccattttgaacagAATATTTTACGGACATTTGCTATGTCACGGTATCAAAAACATGCGACCTAATTGGCATCATCAAGAAACTATTTTGGCATAATGCTGAACGAGTGCAGGG
tgctaaa putative branch site (score: 2)
cttctttctaccattt putative PPT
atattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcctacaaaatcttgctttcttttctttcccttcatgttagtaaaccaaatatgaaatattccatggtatacaagtgaaattcatccaaaaatcttttttggtctaatgaaatattgtatgaactcattgctaaatcacttctttctaccattttgaacagAATATTTTACGGACATTTGCTATGTCACGGTATCAAAAACATGCGACCTAATTGGCATCATCAAGAAACTATTTTGGCATAATGCTGAACGAGTGCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG