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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccctcttgcctgttctgtgccttcaatcttcaattgaattcatattttcttagaaaattttactgctggttattttcaaattactgtttgatcaaaacttcttgcttactttcttcctcacaccttattattccttgttatgtagGAACATAGAGAACAATCTGTTCTCTGGGCCTATACCAGCGAAGTTGCTGAGTATTCCAAATTTCAG

Basic information

species Vitis vinifera
transcript Vv00s0445g00010.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0445g00010.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G25340.1 (Glycine max), 3'ss of exon 7
gtaaccctcttgcctgttctgtgccttcaatcttcaattgaattcatattttcttagaaaattttactgctggttattttcaa-attactgtttgatcaaaacttcttgcttactttcttcctcacaccttattattccttgttatgtagGAACATAGAGAACAATCTGTTCTCTGGGCCTATACCAGCGAAGTTGCTGAGTATTCCAAATTTCAG
|||    ||| |    |  | | |      |||| |    ||   | |  ||  |  ||    | |||| ||  |||    |  |  | | | || | |  |  | |    |  |||     | |    | |   |   |  | |||||||||||||||||||||| | ||||||||||| || ||  |  ||||| ||||||| || ||||||||
gtatatttctcggaaatcatattc------tcttta--caaacatagaaattagtcaaa----tgactgttgtctatacctagcaacaatttatgcttaggaagtttaaagtgttttaaatttaatttgtga--gtctataataatgtagGAACATAGAGAACAATATATTCTCTGGGCCAATTCCCCCAGAGTTGTTGAGTATCCCTAATTTCAG

upper sequence: Vv00s0445g00010.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G07520.1 (Glycine max), 3'ss of exon 8
gtaaccctcttgcctgttctgtgccttcaatcttcaattgaattcatattttcttagaaaattttactgctggttattttcaaattactgtttgatcaaaacttcttgcttactttcttcctcacaccttattattccttgttatgtagGAACATAGAGAACAATCTGTTCTCTGGGCCTATACCAGCGAAGTTGCTGAGTATTCCAAATTTCAG
                         | ||||  | | |   |   | ||  | ||   | || | | ||     ||| |  |   | |   |  |||||  | |    ||    || ||        ||| | |||  || ||||||||||| |||||||||||| | ||||||||||| || ||  | || ||||||| ||| || ||||||||
------------------------gtacaattcttact---accaaaatactttttagatatataaatgaataatatgtatatcctgcaactgcatcaatccatagaactagaatttttta------cttgtgatttattattatgtagGAATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGCTGACTATCCCTAATTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaaaacttcttgcttactttcttcctcacaccttattattccttgttatgtagGAACATAGAGAACAATCTGTTCTCTGGGCCTATACCAGCGAAGTTGCTGAGTATTCCAAATTTCAG
                        tcctcac  putative branch site (score: 2)
                  ctttcttcctcacacc  CT-rich tract
                                  ttattatt  TA-rich tract