Sequence
atgc intronic sequence ATGC exonic sequence...tttttccattagctatgctcccatgttcttcgattatatgttttgattaaaaaaaaatttatttgattagatgatatgctatggtaatggcattttgcagCATCTATTTTAAAGGAAAAACTTTCATCCTTGGGTTCATCTGGAATTTTAGCTGACCATCAACTTCAGGCGCAATTGCAAGAACATCATTTGAAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0379g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os09g24260.1 (Oryza sativa), 3'ss of exon 9
tttttccattagctatgctcccatgttcttcgat---tatatgttttgattaaaaaaaaatttatttgattagatgat--atgctatggtaatggcattt-----tgcagCATCTATTTTAAAGGAAAAACTTTCATCCTTGGGTTCATCTGGAATTTTAGCTGACCATCAACTTCAGGCGCAATTGCAAGAACATCATTTGAAAGG
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----------gattatgatttcatatagcataattggtatatatattattaacaaacgattatatttgagcagcccatacatcctttaaaatttgtttttggtattgcagCTGCTGTTCTGAAGGAGAAACTTTTAGCCCTGGGTTCATCTGGAATTTTAGCTGAGCACCAGCTCCAGGCTCAGCTGCAAGAGCAGCACTTGAAGGG
upper sequence: Vv00s0379g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G150772_T01 (Zea mays), 3'ss of exon 7
tttttccattagctatgctcccatgttcttcgattatatgttttgattaaaaaaaaatttatttgattagatgatatgctatggtaatggcattttgcagCATCTATTTTAAAGGAAAAACTTTCATCCTTGGGTTCATCTGGAATTTTAGCTGACCATCAACTTCAGGCGCAATTGCAAGAACATCATTTGAAAGG
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ttacttgccacaccatacttatggtatatttgggtaaaaaatagatgtttcaagcagtctgtgaatcctaagtacatcttggtttactctggtgctacagCTGCTGTTTTAAAGGAGAAACTATTAGCCTTGGGATCATCTGGAATATTAGCAGAGCATCAACTTCAGGCACAACTACAAGAGCAGCACTTGAAGGG
upper sequence: Vv00s0379g00020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G50590.1 (Arabidopsis thaliana), 3'ss of exon 10
---------------------------------------------------------------tttttccattagctatgctcccatgttcttcgat--tatatgttttgattaaaaaaaaatttatttg----attagatgatatgctatggta-atggcattttgcagCATCTATTTTAAAGGAAAAACTTTCATCCTTGGGTTCATCTGGAATTTTAGCTGACCATCAACTTCAGGCGCAATTGCAAGAACATCATTTGAAAGG
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gtgaatcttgaacactaatgttattcaaacataacaattgatactcttcttaagctgtatggatgtgtctcttgagagtaaccaatcctctgttaatagtatgggttgtgggttcgaccagagtcgttcgtatcaatatccggctttctaacatgtgagatgattaacagCTTCTGTTCTAAAGGAAAAGCTTTCGTCTATGGGTTCCTCTGGAATTTTAGCCGAGCATCAACTTCAAGCTCTGCTACAGGAGCACAAGGG------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attaaaaaaaaatttatttgattagatgatatgctatggtaatggcattttgcagCATCTATTTTAAAGGAAAAACTTTCATCCTTGGGTTCATCTGGAATTTTAGCTGACCATCAACTTCAGGCGCAATTGCAAGAACATCATTTGAAAGG
aaaaaaatttatttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttccattagctatgctcccatgttcttcgattatatgttttgattaaaaaaaaatttatttgattagatgatatgctatggtaatggcattttgcagCATCTATTTTAAAGGAAAAACTTTCATCCTTGGGTTCATCTGGAATTTTAGCTGACCATCAACTTCAGGCGCAATTGCAAGAACATCATTTGAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -ccattag
- - - - - - - - gctccca
- - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatatgc