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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattatgatttcaatttacattttttagtgtgttattgtaaattttcaattagaggtttttgtaattgagttattatgatttccatttctgaacttgtagGTGATTATGATTTAAAGGTCATGCGACAAGAGTACTATATTAATCGACAGAAGACGGTAGGGATCTCTTCTTTATATT

Basic information

species Vitis vinifera
transcript Vv00s0333g00070.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0333g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G154892_T01 (Zea mays), 3'ss of exon 11
gattatgatttcaatttacattttttagtgtgttattgtaaattttcaattagaggtttttgtaattgagttattatgatttccatttctgaacttgtagGTGATTATGATTTAAAGGTCATGCGACAAGAGTACTATATTAATCGACAGAAGACGGTAGGGATCTCTTCTTTATATT
              ||   |      | |   || |      | | |||||   |  || |||  |||  |||   |  | |         ||  | |||| ||||||||||||||||||||||| || |||||||| |||||  | || || |||                      
-------------gttcgtaggaaacatttcattttcagtgttctacaatttttg--ttgtgttgttgtcttagcttcttcttatcactcaaatatttagGGGATTATGATTTAAAGGTCATGCGCCAGGAGTACTACATTAACAGGCAAAAAACG----------------------

upper sequence: Vv00s0333g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G15510.1 (Glycine max), 3'ss of exon 11
------------------------gattatgatttcaatttacattttttagtgtgttattgtaaattttcaattagaggtttttgtaattgagttattatgatttccatttctgaacttgtagGTGATTATGATTTAAAGGTCATGCGACAAGAGTACTATATTAATCGACAGAAGACGGTAGGGATCTCTTCTTTATATT
                        |   |  | ||||||||   | ||||| |   || || |  | | | ||| |    || || ||||| |||    ||  ||   || | | | | | |||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||  |                       
gtattttctcaactctcaactattgggaagaaattcaattt---tattttattcatttgttttgtactgtaaatgattcattcttctaatttagt----atagttaa-atcttttatcctctagGTGATTATGATTTGAAGGTCATGCGCCAAGAGTACTACATTAATCGGCAGAAAGCA----------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattagaggtttttgtaattgagttattatgatttccatttctgaacttgtagGTGATTATGATTTAAAGGTCATGCGACAAGAGTACTATATTAATCGACAGAAGACGGTAGGGATCTCTTCTTTATATT
           tttttgtaattgagtt  TA-rich tract