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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcatacctattttaatgtgttaatagtaaatttatgttattcagtatgtcacatactccctccttttaatttcataatacttgcacatcatagatgctgtttgaaataaaaacaaaatattataaaacaccaagcaatatgactgttatttgaggtcaggttactttgtgcagAGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTGGGAACAATAGCAGGAGGTTGTATTCTGGATTTAATGACTTCTACAATCT

Basic information

species Vitis vinifera
transcript Vv00s0282g00040.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G32670.1 (Glycine max), 3'ss of exon 11
gttagttcatacctattttaatgtgttaatagtaaatttatgttatt-cagtatgtcacatactccctccttttaatt--tcataatacttgcacatcatagatgc-tgtttgaaataaaaacaaaatatt-ataaaacaccaagcaatatgactgttat-ttgaggtcaggttactttgtgcagAGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTGGGAACAATAGCAGGAGGTTGTATTCTGGATTTAATGACTTCTACAATCT
      | | |  |   || ||    | |      ||  || | ||| || |||   |  |  ||| || || | ||   || |  | ||||||    ||  |  | ||  |       ||| | | | |  ||  || |   |  | |   | ||| || || | ||  | |||||||||  |||   | |||||| ||||||| ||||| ||||||||||| ||||||||| |||| ||  |||| ||||| |   |||||||||  |||| |   ||  | |
-----gtgagagtttgcttcatccaatgaccccttatgcatataattgcactattgtagttgttccttctttcttatatatcttgtttcttgcatggaatttaaacatgcctagtcagtaaatacactttccatgtaagatataata-tgctattgtaatattaaagttggattactttgt-tagACTGATGCAGATTTGATATTTGGAGGAATTACAATTGTATGTGGAATAGTGGGCACTTTAGCTGGAGGCTTCGTTCTGGATTATATGAGTAACACCTTAT

upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G30370.1 (Glycine max), 3'ss of exon 11
gttagttcatacctattttaatg-tgttaatagtaaatttatgttattcagtatgtcacatactccctccttttaatttcataatacttgcacatcatagatgctgtttgaaataaaaacaaaatattata-aaacaccaagcaatatgactgttatt----tgaggtcaggttactttgtgcagAGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTGGGAACAATAGCAGGAGGTTGTATTCTGGATTTAATGACTTCTACAATCT
|| || |  ||  |    ||||| |   |||  |  ||     ||  | |   |  |   | || | | | |||| | || |  |||||||  |  |   | ||    | |    | | |||   ||| || |     |  |  | |  | | |||||    | ||  ||  |||||| |||||||  || |||||| |||| || ||||| |||||  |||| |||||||||||||| ||  |||||||||| | | |||| ||||| ||||||   ||||| |
gtgagattttattttagctaatgatcacaattatgcataagattttattaacgtagctgttccttctttccttta-tatctttttacttgcttaaaaattaagccaaataagtatataccaagtaattttatagttttctggtgacagcaatattattgcactaagaacaatttactt-gtgcagACTAATGCAGATATGATGTTTGGAGGAATTACTGTTGTATGTGGAATATTGGGCACCGTAGCAGGAGGCTTTGTTCTTGATTTCATGACTAACACAATAT

upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G06660.1 (Glycine max), 3'ss of exon 9
gttagttcatacctattttaatgtgttaatagtaaatttatgttattcagtatgtcacatactccctccttttaatttcataatacttgcacatcatagatgctgtttgaaataaaaacaaaatattataaaacaccaagcaatatg--actgttat-ttgaggtcaggttactttgtgcagAGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTGGGAACAATAGCAGGAGGTTGTATTCTGGATTTAATGACTTCTACAATCT
|| ||    | | |  |  ||||  |   | ||  || |   |     | | |      | || | | ||| || | || |  | ||||||    ||  || |  |   |   |  ||  | |  ||  |    |  |   ||||||  | ||| || |||  ||  | |||||||| | |||   | |||||| ||||||| ||||| ||||||||||| |||||||||  ||| |   |||| ||||| | | |||||||||  ||||            
gtgagaatttgcttcatccaatg-atcccttgtgcatatgattgtactattgtagttgttccttctttcttata-tatcttgtttcttgcatggaatttattcattcctagtcagtaaatacactttccatg-taagatataatatgctattgtaatattggagttggattactttg-gtagACTGAAGCAGATTTGATATTTGGAGGAATTACAATTGTATGTGGAATAGCGGGCATTTTAGCTGGAGGCTTTGTTCTGGATTATATGA------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871367|gb|DT020422.1|DT020422
EST:     GCGCATACTCTTACTGGGGGCCAAAAGCTGGTTATAATATTTATAATATG                         AGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTG
genomic: GCGCATACTCTTACTGGGGGCCAAAAGCTGGTTATAATATTTATAATATGgttagttcat ... ctttgtgcagAGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attataaaacaccaagcaatatgactgttatttgaggtcaggttactttgtgcagAGCAAGGCAGATCTGATATTCGGAGGGATTACAATTGTGTGTGGAATATTGGGAACAATAGCAGGAGGTTGTATTCTGGATTTAATGACTTCTACAATCT
                                          ttacttt  CT-rich tract
                         tgttattt  TA-rich tract