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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcgctgttatgaaattaactattcctgggtctttacctggagactatcttgaatttataccatattttcctccaaccctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTG

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 3'ss of exon 6
----gtatggcgctgttatgaaattaactattcctgggtct--ttacctggagactatcttgaat-----ttataccatattttcctccaaccctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTG
     ||   |     | |       | ||||  |   | |  | |  || | |||||  ||| |     |  || |||    |    |||       ||||| || | |||||||| || || || |||| |||  | ||||| ||||||||||| || || || |||||||||||||| || |||||||| ||||| |
ataactaatacatgagtttatgccctaatattgattactttgatcaattgtaaactattctgattgctgatgttaacatggactttctcaatttcttcagGTTCTGTTTGACATGGGTCCTCCTATGAGCAGGGAAGTTCAGCTGGTTTCTTTCCATACTGTGTCAAAAGGATATTGGGGGGAGTGTGGACAACGTGGAG

upper sequence: Vv00s0225g00130.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM5G840582_T01 (Zea mays), 3'ss of exon 7
----------------gtatggcgctgttatgaaattaact-attcctgggtctttacctggagactat-cttgaatttat---accatattttcctccaaccctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTG
                |        | || ||  || |||| ||   ||   ||| |||| |     ||  |||   | |    | |||   || ||| |    |   ||||| || | |||||||| || || ||||||| |||| | |||||||||||||||||||| || || ||||| || ||||| || |||||||| |||||||
gtacttttgatttctggccaataattcttttgtcatgaactcatggttgcaacttgacctaggcttaatatttgggctcaccaaaacatgcctttctcgactttttccagGTTATGTTCGACATGGGTCCGCCAATAAGCAGGGAGGTTCAGCTTGTTTCTTTCCACACTGTGTCCAAAGGGTACTGGGGAGAGTGTGGACAACGTGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349817756|gb|FQ407745.1|FQ407745
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATTAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351019694|gb|FQ439511.1|FQ439511
EST:     CCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCCAGGAGCTCCAGCTTGTTTC
genomic: CCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAA-Ggtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTC
EST: gi|30299046|gb|CB975840.1|CB975840
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTATAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|32270153|gb|CD719312.1|CD719312
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110389517|gb|EC954364.1|EC954364
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|28960785|gb|CB340400.1|CB340400
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GCTTTGATGGACATGGG-CCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|71877299|gb|DT026354.1|DT026354
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|32247739|gb|CD713558.1|CD713558
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351036202|gb|FQ464047.1|FQ464047
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351023682|gb|FQ448233.1|FQ448233
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAGGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|18458318|gb|BM436596.1|BM436596
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|294966650|gb|GW839641.1|GW839641
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCATCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|32248182|gb|CD714001.1|CD714001
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|29784204|gb|CB344645.2|CB344645
EST:     ATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|27580138|gb|CB002833.1|CB002833
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349833249|gb|FQ416627.1|FQ416627
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGAATG-ACATGGGCCCACCC
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGA-TGGACATGGGCCCACCC
EST: gi|27582523|gb|CB005218.1|CB005218
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349807317|gb|FQ401309.1|FQ401309
EST:     ACCAACAGAATATTTACCANGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAACTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|27579398|gb|CB002093.1|CB002093
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349808113|gb|FQ403300.1|FQ403300
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|30325827|gb|CD009089.1|CD009089
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110361483|gb|EC924957.1|EC924957
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110689868|gb|EE066470.1|EE066470
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|30299121|gb|CB975915.1|CB975915
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351048786|gb|FQ449654.1|FQ449654
EST:     ACCCACAGAATATTTACCAAGATGAGCGCCCTTTTATCAGTGCTATAAAG                         GTTTTGATGGACATGGGCCCACCCA
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCA
EST: gi|18459781|gb|BM438059.1|BM438059
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110372740|gb|EC936928.1|EC936928
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110417553|gb|EC983619.1|EC983619
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349820046|gb|FQ404768.1|FQ404768
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349808629|gb|FQ405773.1|FQ405773
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGAAGGACATGGG
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGG
EST: gi|349821055|gb|FQ404308.1|FQ404308
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349821509|gb|FQ408068.1|FQ408068
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAAAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110362940|gb|EC926503.1|EC926503
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110707090|gb|EE083187.1|EE083187
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110379655|gb|EC944867.1|EC944867
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351025435|gb|FQ435127.1|FQ435127
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110377565|gb|EC942640.1|EC942640
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|110687378|gb|EE064734.1|EE064734
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|71857816|gb|DT006871.1|DT006871
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|349811946|gb|FQ410743.1|FQ410743
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCACTGCTAGAAAG                         GTTTTGATGGACA
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACA
EST: gi|71874055|gb|DT023110.1|DT023110
EST:     AACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: AACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|351024976|gb|FQ433393.1|FQ433393
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGATTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|32248822|gb|CD714641.1|CD714641
EST:     CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: CCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|71874947|gb|DT024002.1|DT024002
EST:     ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: ACCAACAGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
EST: gi|30299262|gb|CB976056.1|CB976056
EST:     AGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAG                         GTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT
genomic: AGAATATTTACCAGGATGAGCGCCCTTTTATCAGTGCTAGAAAGgtatggcgct ... accctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttacctggagactatcttgaatttataccatattttcctccaaccctgaaagGTTTTGATGGACATGGGCCCACCCATAAGCAAGGAGCTCCAGCTTGTTTCTTTCCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGTGGTG
                                   ttttcctccaaccct  CT-rich tract
                      aatttataccatattt  TA-rich tract