Sequence
atgc intronic sequence ATGC exonic sequencegtaactgcaatcacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 3'ss of exon 8
gtaactgcaatcacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA
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--------------gtgaattttactgctcaatagtgcatgctgaatcttcaccttctg-taatcagtcaaat---aatt-cacttgttatgcaatctgcagGTTTGTGACAAGCAGAAGGCAATACTTCTAGCAGATATGGCACATATCAGTGGGCTTGTCGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G135283_T03 (Zea mays), 3'ss of exon 8
--------------------------------------------gtaactgca-atcacaacaat-catacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA
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gcaaggtttctttccacgatagtattttttctccaagatgcaagggagctgcacattattatattacagagaactatacagaacattgaaccgcgatctttttttttttatcaatcaaataattccataatgttat-gtgtc-gacagATATGCAACAAGCAGAAGGCAATACTTCTAGCAGACATGGCACATATTAGTGGGCTTGTTGCAGCTGGTGTTGTTCCATCTCCTTTTGATTATGCAGATG
upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 9
gtaactgcaatcacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaag-ttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA
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---ctttttttcttggtgaagggataaggctgttgttgttgtaccttttactttgaatgatactatggaagtcccaaggttaaatttgtgaagcatgttacagGTTTGTGATAAACAGAAAGCTATATTATTGGCAGATATGGCACACATCAGTGGATTGGTTGCAGCTGGTGTCATCCCATCACCTTTTGATTATGCAGATG
upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 8
------------------------gtaactgcaat-cacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaag-ttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA
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gtaacttgttgattatacaaaatgattttttaaatatagataaatattaaattgtcttggaatttgtggttttaaatttgaatggttatttggaacaccaaaggttgaacttgtgaagcatgttacagGTGTGTGATAAACAGAAAGCTGTGCTGTTGGCAGATATGGCACACATCAGTGGATTAGTTGCAGCTGGTGTTATCCCTTCACCTTTTGATTATGCAGATG
upper sequence: Vv00s0211g00070.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 8
-----gtaactgcaatcacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaag-ttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA
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cttttttagtttttggtgaagggataaggctgttgttgtacctttt--------actttgaatgatactatggaagtcccaaggttaattttgtgaaacatgttacagGTTTGCGATAAACAGAAAGCTATACTATTGGCAGATATGGCACACATCAGTGGATTGGTTGCAGCTGGTGTCATCCCATCACCTTTTGATTATGCTGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA
aagttacatttttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactgcaatcacaacaatcatacatttttttctctttttttggtttgacctcatttgatggtctggaaagtccaagttacatttttaaagtatttgacagGTTTGTGACAAGCAGAAAGCTATCTTGTTGGCAGATATGGCACATATTAGTGGGTTGGTTGCGGCTGGTGTTATCCCATCACCATTTGAGTATGCAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT