Sequence
atgc intronic sequence ATGC exonic sequence...tctctccttttctccctttctctctttctctctttctaatgtgttatatgttcatctgcttcttgattaatgtttaatacttttctatctcatggaatagATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0187g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G01270.2 (Glycine max), 3'ss of exon 11
tctctccttttctccctttctctctttctctctttctaatgtgttatatgttcatctgcttcttgat----taatgtttaatactt-ttctatctcatggaatagATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT---
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---ttctatctgataattgcttgcccttgcctatgagaaaaagttatactttgaaacagttatacataatacaaaaaatcccacttattctacctctctg--tagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTTGGAACTGGGACAGTTAGTGGTCCTGTA
upper sequence: Vv00s0187g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G01270.1 (Glycine max), 3'ss of exon 11
tctctccttttctccctttctctctttctctctttctaatgtgttatatgttcatctgcttcttgat----taatgtttaatactt-ttctatctcatggaatagATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT
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---ttctatctgataattgcttgcccttgcctatgagaaaaagttatactttgaaacagttatacataatacaaaaaatcccacttattctacctctctg--tagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTTGGAACTGGGACAGTTAGTGGTCCT
upper sequence: Vv00s0187g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G12100.1 (Glycine max), 3'ss of exon 11
tctctccttttctccctttctctctttctctctttctaatgtgttatatgttcatctgcttcttgatta-----atgtttaatactt-ttctatctcatggaatagATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT
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----tccatcgtataattgcttgcccttgcctattagagaaagttatactttgaaacagttatacataatacaaaaaaatcacacttgttctgcctctttg--tagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTCGGAACTGGGACAGTTAGTGGTCCT
upper sequence: Vv00s0187g00300.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G12050.1 (Arabidopsis thaliana), 3'ss of exon 11
tctctccttttctccctttctctctttctctctttctaatgtgttatatgttcatctgcttcttgattaatgtttaatacttttctatctcatggaatagATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT
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-----------gtgagttcctctataatctcctacccaat-tcctccatataattaaacagtttggttca-----aactcttttaaacttattgtgacagATATTGGACCATAACGCAGCAGCTAGCACACCATACCGTTAACGGTTGCAATTTGAGGCCTGGTGATCTCCTTGGCACAGGAACCATAAGCGGACCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgttcatctgcttcttgattaatgtttaatacttttctatctcatggaatagATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT
tacttttctatctc CT-rich tract
attaatgtttaatact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctctccttttctccctttctctctttctctctttctaatgtgttatatgttcatctgcttcttgattaatgtttaatacttttctatctcatggaatagATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
-ctctcct
- - - - - - -ccctttc
- - - - - - - - - tctctct