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gtaagtgagcaaccatttgtcattcattatcctaattataacgtcatcaaataactcattcaggtgaaacacccctttttcccatcttcagGTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAG
species | Vitis vinifera |
transcript | Vv00s0181g00120.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACATGGAACTCTTATACATCTTACATGGCCAAGAGGGTGGGGTCACAAAT GTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAGEST: gi|351047461|gb|FQ454953.1|FQ454953
genomic: ACATGGAACTCTTATACATCTTACATGGCCAAGAGGGTGGGGTCACAAATgtaagtgagc ... ccatcttcagGTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAG
EST: ACATGGAACTCTTATACATCTTACATGGCCAAGAGGGTGGGGTCACAAAT GTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAGEST: gi|351028547|gb|FQ444828.1|FQ444828
genomic: ACATGGAACTCTTATACATCTTACATGGCCAAGAGGGTGGGGTCACAAATgtaagtgagc ... ccatcttcagGTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAG
EST: ACATGGAACTCTTATACATCTTACATGGCCCAGAGGGTGGGGTCACAAAT GTCCAGTTCTCAAAAGATGGEST: gi|352798434|gb|FQ480459.1|FQ480459
genomic: ACATGGAACTCTTATACATCTTACATGGCCAAGAGGGTGGGGTCACAAATgtaagtgagc ... ccatcttcagGTCCAGTTCTCAAAAGATGG
EST: ACATGGAACTCTTATACATCTTACATGGCCAAGAGGGTGGGGTCACAAAT GTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAGEST: gi|351024039|gb|FQ423462.1|FQ423462
genomic: ACATGGAACTCTTATACATCTTACATGGCCAAGAGGGTGGGGTCACAAATgtaagtgagc ... ccatcttcagGTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAG
EST: ACATGGAACTCTTATACATCTTACATGGCCAAAAGGGTGGGGTCACAAAT GGTC-AGTTCTCAAAAGAGGGCAA
genomic: ACATGGAACTCTTATACATCTTACATGGCCAAGAGGGTGGGGTCACAAATgtaagtgagc ... ccatcttcagG-TCCAGTTCTCAAAAGATGGCAA
tataacgtcatcaaataactcattcaggtgaaacacccctttttcccatcttcagGTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAG
aaataac putative branch site (score: 2)
cacccctttttcccat putative PPT
atcaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgagcaaccatttgtcattcattatcctaattataacgtcatcaaataactcattcaggtgaaacacccctttttcccatcttcagGTCCAGTTCTCAAAAGATGGCAATTTTTTGTATACTGGAGGCCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG