1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catgaatttgaattatgcatctaatctagtcaagaatttaacatctagatatgcaatgcttagtcttgggaagtaactatggatttgttctctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCACAAGAAGAAATGCATGCTGTTGCTGACTATATCAAGCGTCAGGGGCGGGT
species | Vitis vinifera |
transcript | Vv19s0177g00150.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGG GTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCACEST: gi|110359641|gb|EC921456.1|EC921456
genomic: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGGgtatgtacca ... tctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCAC
EST: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGG GTCGACTCTCTGGTGTCATGGATAATAGAGGAAAATTCATATACATCTCACEST: gi|110357078|gb|EC920372.1|EC920372
genomic: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGGgtatgtacca ... tctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCAC
EST: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGG GTCGACTCTCTGGTGTCATGGATAATAGAGGAAAATTCATATACATCTCACEST: gi|34543545|gb|CF511777.1|CF511777
genomic: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGGgtatgtacca ... tctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCAC
EST: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGG GTCGACTCTCTGGTGTCATGGATAATAGAGGAAAATTCATATACATCTCACEST: gi|34543459|gb|CF511691.1|CF511691
genomic: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGGgtatgtacca ... tctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCAC
EST: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGG GTCGACTCTCTGGTGTCATGGATAATAGAGGAAAATTCATATACATCTCACEST: gi|30329631|gb|CD012893.1|CD012893
genomic: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGGgtatgtacca ... tctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCAC
EST: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGG GTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCAC
genomic: GACTGTATTAATCGGATAACCTCCCTGGAAAATATGGgtatgtacca ... tctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCAC
tagatatgcaatgcttagtcttgggaagtaactatggatttgttctctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCACAAGAAGAAATGCATGCTGTTGCTGACTATATCAAGCGTCAGGGGCGGGT
aagtaac putative branch site (score: 2)
tttgttctct putative PPT
taactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgaatttgaattatgcatctaatctagtcaagaatttaacatctagatatgcaatgcttagtcttgggaagtaactatggatttgttctctgcattagGTCGACTCTCTGGTGTCATGGATGATAGAGGAAAATTCATATACATCTCACAAGAAGAAATGCATGCTGTTGCTGACTATATCAAGCGTCAGGGGCGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
catgaat
- - - - - - - - gcatcta
- - - - - - - - - - - - - - -tcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgga