Sequence
atgc intronic sequence ATGC exonic sequencegtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccagGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G46780.1 (Glycine max), 3'ss of exon 7
gtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccagGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG
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gtattttgaagatttccaggtttcaaatttacagtgattttacttttc-caatgtgctaattgaatcatgacacgtttcctagGGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAG
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G01920.1 (Glycine max), 3'ss of exon 7
gtatgataaagttacagctggttt-ggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccagGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG
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gtatttgaagatttc--ctgatttcaaatttacaatgactttacttttc-caatgtgctaactagatcatgaagcgtttcctagAGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCTTATGCAATGGATCTGCTGGATTATGTTCAAAAG
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatgataaagtt--acagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccagGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG
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gtct-ataaattttcacagcctttttagtgaccctttttcgt--ccattaggattattcgttatgctcaaatgttttcttcacagGGTTCCTGTTTTTGAGCAGAGGATTGATAACATAGTTGGTATTGCATATGCTATGGATCTCCTAGATTATGTTCCAAAG
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G13070.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttc-cagGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG
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--gtaaaaaaattcca--tagacttctcacttaagccgtttcccttggattattcatcaagc--tcaattaattttcttctcagGGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtgattatataattcttaaccccacatctaatattttatgaacatccttccagGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG
catccttcc CT-rich tract
attatataattcttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccagGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA