1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gccgctttaactacaatgccaaccacagttagttgcataacctccaaaaggatgatttcctgaattataattacatgttttttctctgctatttttgcagCATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAG
species | Vitis vinifera |
transcript | Vv19s0015g01750.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCAGTGAAT CATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAATEST: gi|32249634|gb|CD715453.1|CD715453
genomic: TGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCAGTGAATgtaagttgca ... atttttgcagCATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAAT
EST: TGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCAGTGAAT CATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAATEST: gi|32270441|gb|CD719600.1|CD719600
genomic: TGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCAGTGAATgtaagttgca ... atttttgcagCATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAAT
EST: TGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCAGTGAAT CATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAAT
genomic: TGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCAGTGAATgtaagttgca ... atttttgcagCATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAAT
aaaaggatgatttcctgaattataattacatgttttttctctgctatttttgcagCATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAG
tgttttttctctgcta CT-rich tract
tgaattataattacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgctttaactacaatgccaaccacagttagttgcataacctccaaaaggatgatttcctgaattataattacatgttttttctctgctatttttgcagCATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - aactacaa
- - - - - - - - - ccaacca
- - - - - - - - - - - - - - - - - - - - cctccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctga