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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagctgtcatttttattttacatgtcatgtgagtgtgtgttcctatttgtctctgaggttacttttattattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG

Basic information

species Vitis vinifera
transcript Vv19s0014g05210.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G17110.1 (Glycine max), 3'ss of exon 7
gtgagtagctgtcatttttattttacatgtcatgtgagtgtgtgttcctat---ttgtctctgaggttacttttatt--attgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG
|| |||| | ||   |||| |  ||||| |||     |  | | |||  ||   || | ||| |   ||    ||    ||| ||||||| ||  || || ||||||| ||| |||||||| ||||||||||||||||||||||||||||| || |||
gtaagtaacagtttatttt-tggtacatatcaatcatgaatattttctaatttcttatttctaattctagcaatacctaatttcagGTATACAATGCTTCAGTTCATTTAAATTATGTTGATTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAG

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G02690.3 (Glycine max), 3'ss of exon 6
gtgagtagctgtcatttttattttacatgtcatgtgagtgtgtgttcctatttgtctctgaggttacttttatta--ttgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG
|| |||| |  |  ||||| |  ||||| |||| |||   | | |   |  || | ||| |  |||    ||     || ||||||| ||  || || ||||||| ||| ||||||||||||||||||||||| |||||||||||||| || |||
gtaagtaacaatttttttt-tggtacatatcat-tgatcttttctaatttcttatttctaattttagcaatacctattttcagGTATACAATGCTTCAGTTCATTTAAATTATGTTGACTGTAATAGGTGGCTAGGTGATTTTATCCTCTCAAAG

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G36310.1 (Glycine max), 3'ss of exon 7
gtgagtagctgtcatttttattttacatgtcatgtgagtgtgtgttcctatttgtctctgaggttacttttattattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG
|| || | | ||   |||| |  ||||| |||| |||   | |  |  | | |   |||   | ||| |     ||| ||||| | ||  || || || |||  ||| ||||||||||||||||||||| |||||||||||||||| || |||
gtaagcaacagttcatttt-tggtacatatcat-tgatctttttctaatttctaattctagtgataccta----atttcagGTTTACACTGCTTCAGTGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAG

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G34240.1 (Glycine max), 3'ss of exon 9
gtgagtagctgtcatttttattttacatgtcatgtgagtgtgtgttcctatttgtctctgaggttacttttattattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG
                       ||||| |||| ||    | | |||  |||| |   |   || |    ||  ||| | ||||| ||  || || || |||  ||| ||||||||||||||||||||| |||||||||||||||| || |||
----------------------gtacatatcat-tgt---tcttttctaatttctaattctagtgataccta--atttctggtatacaatgcttcagTGCATATAAATTATGTTGACTGTAATAGGTGGTTGGGTGATTTTATCCTCTCAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719190|gb|FC065436.1|FC065436
EST:     ATGGACGGATCTTCCAATCTAA-TTTCCGACAAA-TATGTACAGTTTCCT                         ATATTCATAGCATCCGTTCATTCAA-CTATGTTGA
genomic: ATGGACGGATCTTCCA-TCTAAATTTCCGACAAAATATGTACAGTTTCCTgtgagtagct ... attattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGA
EST: gi|351053554|gb|FQ459301.1|FQ459301
EST:     CATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCT                         GTATTCATGGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTG
genomic: CATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCTgtgagtagct ... attattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTG
EST: gi|351036699|gb|FQ457412.1|FQ457412
EST:     CATGGACGGATCTTCCATCTAAATTTCCGGCAAAATATGTACAGTTTCCT                         GTATTCATGGCATCCGTTCATTTCAA-CTATGTTGACTGTAATAGGTGG
genomic: CATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCTgtgagtagct ... attattgcagGTATTCATAGCATCCGTTCATT-CAAACTATGTTGACTGTAATAGGTGG
EST: gi|110378718|gb|EC943862.1|EC943862
EST:     CATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCT                         ATATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTG
genomic: CATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCTgtgagtagct ... attattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTG
EST: gi|351043856|gb|FQ452650.1|FQ452650
EST:     ATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTTCCT                         GTATTCATGGCATCCGTTCATTCAAACTATGTTGACTGAAATA
genomic: ATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTT-CCTgtgagtagct ... attattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATA
EST: gi|352791431|gb|FQ481010.1|FQ481010
EST:     CATGGACGGATCTTCCATCTAAATTTCCGGCAAAATATGTACAGTTTCCT                         GTATTCATGGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTG
genomic: CATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCTgtgagtagct ... attattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTG
EST: gi|351033874|gb|FQ447912.1|FQ447912
EST:     CATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCT                         GTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTG
genomic: CATGGACGGATCTTCCATCTAAATTTCCGACAAAATATGTACAGTTTCCTgtgagtagct ... attattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcatgtgagtgtgtgttcctatttgtctctgaggttacttttattattgcagGTATTCATAGCATCCGTTCATTCAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG
                                        cttttatt  CT-rich tract
                                     ttacttttattatt  TA-rich tract