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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttctcatccctagtgtatgtaaccattgaagcttctgtacatggaatatctgttttgttattattgatggaatatgcttcttaacctgactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG

Basic information

species Vitis vinifera
transcript Vv19s0014g04740.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351017257|gb|FQ435609.1|FQ435609
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAGGGTTGGCCATTGGTAATAGCGTATAACTGGATACGATTTGATGAA
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATA-CTGGATACGATTTGATGAA
EST: gi|352786282|gb|FQ478893.1|FQ478893
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: gi|22011789|gb|BQ796823.1|BQ796823
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: gi|349829213|gb|FQ419745.1|FQ419745
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAGGGTTGGCCATTGGTAATAGCGTA
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTA
EST: gi|349814559|gb|FQ399199.1|FQ399199
EST:     CATCGGAACGATGCCNGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGA
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGA
EST: gi|351041305|gb|FQ447432.1|FQ447432
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: gi|351046268|gb|FQ442646.1|FQ442646
EST:     CGTCGGAACGATGCCAGATGCCCATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAAGGTTGGCC
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCC
EST: gi|349809129|gb|FQ398926.1|FQ398926
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: gi|349824512|gb|FQ413179.1|FQ413179
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAAAGAAA                         CTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGA
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGA
EST: gi|351056793|gb|FQ443420.1|FQ443420
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAGGGTTGGCCATTGATAATAGCGTATACTGGATACGATTTGATGAAG
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
EST: gi|351038453|gb|FQ464319.1|FQ464319
EST:     CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAG                         CTGAAAGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG
genomic: CATCGGAACGATGCCAGATGCCAATGTTATCATCAAAAAGCTTAGAGAAGgttttatcct ... gactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatatctgttttgttattattgatggaatatgcttcttaacctgactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG
          ttttgttattattgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catttctcatccctagtgtatgtaaccattgaagcttctgtacatggaatatctgttttgttattattgatggaatatgcttcttaacctgactgtgcagCTGAAGGGTTGGCCATTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - tcatccc
- - - - - - - - - - -gtaacca
- - - - - - - - - - - - - - -tgaagct
- - - - - - - - - - - - - - - - - - - - tacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct