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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttctctctcatttctttctcctattcatgactaaaggtagtcctaggtttatctttatttgattctttttttatttggatttttcaaaaagttaactggtttacattcattttgaaatggtgcagGGGAAGTCAATTGAACTTCATTTTAGTACATTTGGGAAAATATGTGGTGCTAAAATCCAAACTT

Basic information

species Vitis vinifera
transcript Vv19s0014g03640.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G34780.1 (Glycine max), 3'ss of exon 9
gtgagtttttctctctcatttctttctcctattcatgactaaaggtagtcctaggtttatctttatttgattctttttttatttggatttttcaaaaagttaactggtttacattcattttgaaatgg-tgcagGGGAAGTCAATTGAACTTCATTTTAGTACATTTGGGAAAATATGTGGTGCTAAAATCCAAACTT
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gtgagtttgcatttctttttattgtagtggaaggaccactttttcttgttcta---taagatttctttaaga-tttgtggatgttgtctaatggctgagcagtttagttgatattcatttttaattgggtgcagGGGAAGTTGATTGAAATTCATTTCAGCACAATGGGGAAAATTTGTGGGGCAAAAATTCAAACTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttggatttttcaaaaagttaactggtttacattcattttgaaatggtgcagGGGAAGTCAATTGAACTTCATTTTAGTACATTTGGGAAAATATGTGGTGCTAAAATCCAAACTT
                   agttaac  putative branch site (score: 3)
        atttttcaaaaagtta  TA-rich tract