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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgtgatccttatgtgtattgtgtgtgttattttgtatcttgaaattgaggtttttggctttatgtctgagttgctgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA

Basic information

species Vitis vinifera
transcript Vv19s0014g02710.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM5G891056_T01 (Zea mays), 3'ss of exon 7
---gtaagtgtgtgatccttatgtgtattgtgtgtgttattttgtatcttgaaattgaggtttttggctttatgtctgagttgctgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA
   || | |      |||| ||  ||    | | |  |||||   |   ||       |  |  |  |  |||       |||   |||| || || || || || |||||  | | ||||||||||||||| |||||  | ||||| || || ||||||||||||||||| ||||| || ||||| ||
gtagttacttctccctcctcatccgtgacctat-taatatttctaacactgtttacctgcctgatatcagtatactctgattg--acagACGTCCCGGAGGGCTGTGTGATAATTAGGGAACATATCCCCATAACAAACTTGTTTACATGCCTTTGGTTCAATGAAGTTGACCGCTTCACGTCCAGAGA

upper sequence: Vv19s0014g02710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G421791_T01 (Zea mays), 3'ss of exon 7
gtaagtgtg-tgatcc--ttatgtgtattgtgt-gtgttattttgtatcttgaaattgaggtttttggctttatgtctgagttgc--tgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA
|| ||||   | |||   |||||   ||   || |  | | ||| |  || |||||     |  |  ||      | |   |||   ||||||||| |||||||| || |||||  | |  ||||| |||||||| || || || || || ||  ||||||||||||||||||||||||| || ||||||||
gtcagtgaactcatcagattatggtaataacgtcgcttcagtttcttgctggaaatcctaatgctgagcggccccttttgcttggcatgcagATGTCCCTGAAGGCTGTGTGATCATCAGAGAACACATCCCCATCACGAACCTCTTCACGTGCTTATGGTTCAATGAAGTTGATCGCTTCACCTCCAGGGA

upper sequence: Vv19s0014g02710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G044866_T01 (Zea mays), 3'ss of exon 7
gtaagtgtgtgatccttatgtgtattgtgtgtgttattttgtatcttgaaattgaggtttttggctttatgtctgagttgctgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA
    ||  ||||||        |   |          || |  | ||    |  |     || |||    ||          |||||||| || ||||| || |||||  | |  || || |||||||| || || || || || ||  ||||||||||||| ||||||||||| || ||||||||
----gtcagtgatctcatcagattacggtaaaagcgcttcggtttttttgctgaaatccctttgctccgcgt----------gcagATGTCCCCGAAGGCTGTGTGATCATCAGAGAGCACATCCCCATCACGAACCTGTTCACGTGCGTATGGTTCAATGAGGTTGATCGCTTCACCTCCAGGGA

upper sequence: Vv19s0014g02710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G35300.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------------gtaagtgtgt-gatccttatgtgta-ttgtgtgtg-ttatt--ttgtatcttgaaattgaggtttttggctttatgtctgagttgctgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA
                                                         || |||||  |||   |   |||  |||  | |  ||  |   |  ||||| ||| |  |   | | |||| ||| ||||||| |||||||||||||||||||||| || ||  |||  ||||| || || ||||||||||| ||||| ||  ||||||||||||||||||||||||| |||||||||||
gtaggaacaacagacgaacagttttcatatattcatgcctgcatatgtaaaatggattatgtgtggagatttgtgcctgtgcttgcatataattgctgcctccatcttaaaaatctgaagtattgctt-atggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA

upper sequence: Vv19s0014g02710.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G35210.1 (Glycine max), 3'ss of exon 7
---------------------------------------------gtaagtgtgt-gatccttatgtgta-ttgtgtgtg-ttatt--ttgtatcttgaaattgaggtttttggctttatgtctgagttgctgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA
                                              || |||||  ||||  |   |||  |||  | |  ||  |   |  ||||| ||| |  |   | | |||| ||| ||||||| |||||||||||||||||||||| || ||  |||  ||||| || || ||||||||||| ||||| ||  ||||||||||||||||||||||||| |||||||||||
gtaggaacagttttcatatattcatgcctgcatatgtaaaatggattatgtgtggagatctgtgcctgtgcttgcatataattgctgcctccatcttaaaaatctgaagtattgctt-atggctgagtttctgcagATGTTCCTGAAGGTTGTGTTATCATAAGAGAACACATTCCAATTACAAATCTCTTTACTTGCTTATGGTTCAATGAAGTTGATCGCTTCACTTCCAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttattttgtatcttgaaattgaggtttttggctttatgtctgagttgctgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA
     ttttgtat  TA-rich tract