Sequence
atgc intronic sequence ATGC exonic sequence...agtcctatacatattatcacattcgtaaatttttgtttgagtttgggtcaactagttcaaagtgtggtatgtgcattttctgatgtgttctttagtgtagGAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01630.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G34680.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------------------------------------------------agtcctatacatattatcacattcgtaaatttttgtttgagtttgggtcaac--tagttcaaagtgtggtatgtgcattttctgatgtgttctttagtgtagGAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAG
| ||| | |||| | | ||| || | | ||||| || | || | || | | | || | | | | | || |||||| ||||||||| |||||||||| ||||||||| |||| ||||||| |||||| || ||||||||||| ||||||||||||||||||
gtataatcctgaactggaaacactcaatttgtatatgaatcccatacattttctagaacattcttctccatgtgtatgcatgggcactgcacatacctgtttgtatttgctgttataacaatacatgccgagctctctgtcaatagtacatgaatatttgattgcaataaatcttggt-tctcatcaactgcagGAAGGGATGGGATTTTGTCTGAGGCTCAATGGCTTCTTGATACAGGTCTTCATCCAAACTCCAATTCTGCAACAAAAGCAATTGGTTACAGACAA
upper sequence: Vv19s0014g01630.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G20040.1 (Arabidopsis thaliana), 3'ss of exon 6
-agtcctatacatattatcacatt-cgtaaatttttgtttgagtttgggtca-actagttcaaagtgtggtatgtgcattttctgatgtgttctttagtgtagGAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAG
| | || | || | | | |||||| | |||| | | | ||| ||| | || | || || | ||| | | |||| |||| || |||| || || ||||||||||| ||| ||||||||||||||| |||||| |||||||||| || ||||| |||||||||
aatttgcatgctctttgctgtgtcgtatgcaattttgtatatatttgcttggcattgcttctgagttt---atctttccttggtgctttgtctctcaactcagGACCCAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAATCCTGCAACTCGTGCCATTGGGTACAGACAG
upper sequence: Vv19s0014g01630.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G20040.3 (Arabidopsis thaliana), 3'ss of exon 6
-agtcctatacatattatcacatt-cgtaaatttttgtttgagtttgggtca-actagttcaaagtgtggtatgtgcattttctgatgtgttctttagtgtagGAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAG-----
| | || | || | | | |||||| | |||| | | | ||| ||| | || | || || | ||| | | |||| |||| || |||| || || ||||||||||| ||| ||||||||||||||| |||||| |||||||||| || ||||| |||||||||
aatttgcatgctctttgctgtgtcgtatgcaattttgtatatatttgcttggcattgcttctgagttt---atctttccttggtgctttgtctctcaactcagGACCCAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAATCCTGCAACTCGTGCCATTGGGTACAGACAGGTGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtcaactagttcaaagtgtggtatgtgcattttctgatgtgttctttagtgtagGAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAG
ttctgat putative branch site (score: 3)
tgttcttt CT-rich tract
attttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtcctatacatattatcacattcgtaaatttttgtttgagtttgggtcaactagttcaaagtgtggtatgtgcattttctgatgtgttctttagtgtagGAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAG
- - - - - - - - -cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc